Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00627 ATGAATGCTTCAGATATGTTGGACTACGAATGGGGAAACCCGTCTTCAATAATGCTAACAGGAAACGAGGAGACCGCCGCCGGAGCTTCCGACCAAACCCACCGTCAAATCTTCGACCACTACGCCTCACACTCGCTCATCCCCGACCACTTTCTTCACGCGCCAACACACTCCGCCGCCACCACCGCCGCGGCCGCCACCGTCGACTACACCAACCACCACCACCACTTCAACCCGCAACCCCACCACCACCACCTCAACCACCACCACCACCCGTTCTTCGACCCACGCGCCTTCCACGGCGCGTCGTCCACCTCCTACCCTCCAACCCCATCCATGCTCTCCCTTGACCCGCTGCCCCACGTCAACGCCGCCAACTGCGGCCCAGGGCCCGGACCCGGCCCAGGCGGACTCCTCCTTGTTCCGAAGTCTGAGGACGTCGGGCGGCCCATGGACTTTGTCGGCTCACGAATTGGCCTAAATCTCGGAGGTCGAACGTATTTCTCCTCCGAGGATGATTTCGTCAGCCGTCTCTACCGTCGGTCTCGGCCGGCGGAATCGGGTTCGGCGGCTTCCTCGAACTCGCCGCGCTGCCAGGCCGAGGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTCCACTCCAAAGCCGCCACCGTTATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTCTCTGAGTTTGATAACGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCACAATCGCCGCAGAAGAAAAACTCAGCAACCATCTCAAGAAATTCAGAAATCTCAACCCTCTTTGGATAATGTTGCAAGATCTCCGCCTGACTCCGGAGCTCAGTCGTCGTCGGTGACGGTGGCGGTGTCACCGCCGGACTATTTCCGGCAGAGGCCGTATCAGAGCACAAACCCTTCCACAAATTCAAGCTCACTGTTTTTCTCTAGCGGGTAG 1008 0.5883 MNASDMLDYEWGNPSSIMLTGNEETAAGASDQTHRQIFDHYASHSLIPDHFLHAPTHSAATTAAAATVDYTNHHHHFNPQPHHHHLNHHHHPFFDPRAFHGASSTSYPPTPSMLSLDPLPHVNAANCGPGPGPGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSEDDFVSRLYRRSRPAESGSAASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPSQEIQKSQPSLDNVARSPPDSGAQSSSVTVAVSPPDYFRQRPYQSTNPSTNSSSLFFSSG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00627 335 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 117 326 IPR044817 GO:0003677
Phac10g00627 335 Pfam SBP domain 198 271 IPR004333 GO:0003677
Phac10g00627 335 SUPERFAMILY SBT domain 196 275 IPR036893 GO:0003677|GO:0005634
Phac10g00627 335 MobiDBLite consensus disorder prediction 264 335 - -
Phac10g00627 335 FunFam Squamosa promoter-binding-like protein 14 189 259 - -
Phac10g00627 335 Gene3D - 188 259 IPR036893 GO:0003677|GO:0005634
Phac10g00627 335 ProSiteProfiles Zinc finger SBP-type profile. 195 272 IPR004333 GO:0003677
Phac10g00627 335 MobiDBLite consensus disorder prediction 276 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00627 Phac-Chr10 7651440 7654335 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00627 6 245 SBP-box Gene Family AT1G02065 44.574 3.54e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac10g00627 SBP 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00627 - - gmx:100802206 521.931