Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00612 ATGGCTTCTAACGCCATCATCCAATACACCTCTTCTTCTTCATCTCCTGCAACTCACATCTACGACGTTTTTGTGAGCTTCCGCGGTGAAGACACGCGCAACAACTTCACTGATTTTCTCTTTCATGCTCTCCGTACAAAAGGCATCCATGTCTTCAAAGATGATGAAGATCTCAAAAAAGGTGAATCCATTGCACCCGAGCTGCTGCAAGCCATTCAAGCCTCTCGACTTTTCATTGTTGTCTTCTCACAGAACTATGCTTCCTCCACCTGGTGCTTGCGTGAATTGGCGGAGATATGTAACTGCTTTGAAGCTTCGCCAAGACGTGTTATTATACCTATTTTTTATGATGTTCGTCCTTCGGTGGTGCGCAAACAGAGTGGACGTTATGAGAAAGCATTTGCAGAACACGAAAAGAGATTCAAAGAAGATGGAGTGAAGATGAAGGAAGTTCATAGATGGAGAGAAGCTCTCACACAAGTGGCTGATCTCTCTGGTTGGGATATCCGAAACAAGTCACAGTCTGAACAGATTGGAAAAATCATTCAAACCGTAATAAATATTTTGGGACCCAAAATGTCAAAACTTCCGAAGGATGAATTGGTTGGGATAGAGTCTCGGGTTGAAGAATTAACTAATCTTCTACGGTTAGATTTAGTTAATGATGTTCGAGTTGTTGGAATTAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGCTCAAGCTTTATACGAAAGAATCTCTCATCAATATGATTTTCATTGTTTTATTGATGATGTGAGCAAAATTTATAGAGATTCTAGTTTACTAGGTGTTCAAAAGGAGCTAATTACTCGGTGTCTAAGTGAGAAAAATCTTGAAATTTGTAATGTTATTGACGGAACATATTTGGTGTGGACTAGGCTGCACAATGCAAGAACACTTCTAGTTCTTGACAATGTTGATCAAGGTGCACAACTTAAGCTATTCACAGGGAACAGAGATATACGTAGATGTGTAGGTGGAGGGAGCAGAATCATCATAATTTCAAGGGATGAACATATTTTGAAGACACATGGAGTGGATGATGTTTATCAAGTCCAATTGTTGAGTTGGGAAAATGCTGTGCAGTTGTTTTGTATAAATGCTTTCAAAGTTAATTATATATTGGACGATTATGAAGAGTTGGCACGTGAGGTACTTTCACATGCTCAAGGTCATCCCTTGGGAATTGAAGTAATTGGATCATCTTTGTTTGGTCGAAATATCTCACAATGGAGAAGTGCATTGGGTAGGCTAAGATATAATAAAGACAAAAATATTATGAATGTTTTACGTATAAGTTTTGATCAGTTGGAAGAAGAAGAAAAAGAAATATTCCTTGATATTGCATGTTTCCTTCATAATCACTTCTATTATAATGAAATTTTAAGCATTCGTGGATTTGATTATGAAAATGGCATTCCAGCTCTCATCGAGAAATCTCTCATAACATGTGAATATGGGGATATTTATATGCATAGGTTGTTGATGGATTTGGGACAAAGTATTGTTAGAGAAAAATCACCTAAGGAACCTCTAAAGTGGAGTAGGTTATGGGATTGCAAAGATTTCGAGAAAGCTATGTTAGACAATGAGGCATCTGAAAATCTTGAAGTCATATATATTGAATGTGATTTGCTTTTGGGGACAGTGAGGGCAGATGGTCTATCGAAAGTTAGACACCTTAAGTTGCTTAAACTTGAAGATGTGAATTTTTCAGGCAGTCTCAATCATCTTTCGAATGAACTAGCATATCTTAATTGGAAGGAATATCCTTTTAAATGTTTGCCTCAAAGTTTTCAGCCAGAAAAACTAGTTGAGTTATACCTTGTTGGGAGCAGTATTAAGCGACTATGGGAAGGCACAAAGCCATTGCACAATTTGAAGCTTTTGGATCTCTCTTACTCTGAAGATTTAGTTGAGATGCCAGATGTTAGAGAGGCCCTAAATCTTGAAAAGATAAAACTTAAAGGATGTATAAAGCTCCCAAAAATCAATCCATCAATCGGTCTTTTGAAAAAGCTTTCATTGTTGAATTTGAGAAACTGCAAAAACCTAGTAAGCTTACCCAATACCATTTTGGGCCTGAATTCTCTTGAATATCTGGATGTCTCTGGATGTTCAAAACTTTGTTTGGTTGAAGCTACTATTCTTTCCCAATCAACATCCTTTTTTATAAAAAAAATGTTGTATTCCAGAGCACAAAGAGACTTAGTCAGCTATTTATTGCCCTCCTCTCCTACTTCCCCTTCTTCTCTCACTTGTTTGCGTGAACTCGATCTAAGCTTCTGTAACTTAGTTCGAATCCCTGATGCCATTGGAAAGTTAAGTTGCCTAGAACACCTAAATTTGGAGGGTAACAATTTTACCACACTTCCCAACCTCGATAACCTTTTCAGACTGTATCATTTAAACTTACAACATTGCAAGCGATTCAAACACTTTCCTGTTCTCCCTTCCCAAACCGACTTTCCCTCAGAAACTTGCAAACTTCCACTACCATATTTGACATATGAAGATTTGGTAGGACTAATCCTTTATAATTGCCCAGAATTAGTTGAGAGGGAACACTGTAATAGCATGATTTTTTCGTGGATGATACAAATTTTTCAGGTGTGCATCCTCCTTCCTTCCTCTTCCCTTCTTTTAAATCTTTTTTTTTCTTCAAAAAATAGCTACTAA 2703 0.3759 MASNAIIQYTSSSSSPATHIYDVFVSFRGEDTRNNFTDFLFHALRTKGIHVFKDDEDLKKGESIAPELLQAIQASRLFIVVFSQNYASSTWCLRELAEICNCFEASPRRVIIPIFYDVRPSVVRKQSGRYEKAFAEHEKRFKEDGVKMKEVHRWREALTQVADLSGWDIRNKSQSEQIGKIIQTVINILGPKMSKLPKDELVGIESRVEELTNLLRLDLVNDVRVVGISGMGGIGKTTLAQALYERISHQYDFHCFIDDVSKIYRDSSLLGVQKELITRCLSEKNLEICNVIDGTYLVWTRLHNARTLLVLDNVDQGAQLKLFTGNRDIRRCVGGGSRIIIISRDEHILKTHGVDDVYQVQLLSWENAVQLFCINAFKVNYILDDYEELAREVLSHAQGHPLGIEVIGSSLFGRNISQWRSALGRLRYNKDKNIMNVLRISFDQLEEEEKEIFLDIACFLHNHFYYNEILSIRGFDYENGIPALIEKSLITCEYGDIYMHRLLMDLGQSIVREKSPKEPLKWSRLWDCKDFEKAMLDNEASENLEVIYIECDLLLGTVRADGLSKVRHLKLLKLEDVNFSGSLNHLSNELAYLNWKEYPFKCLPQSFQPEKLVELYLVGSSIKRLWEGTKPLHNLKLLDLSYSEDLVEMPDVREALNLEKIKLKGCIKLPKINPSIGLLKKLSLLNLRNCKNLVSLPNTILGLNSLEYLDVSGCSKLCLVEATILSQSTSFFIKKMLYSRAQRDLVSYLLPSSPTSPSSLTCLRELDLSFCNLVRIPDAIGKLSCLEHLNLEGNNFTTLPNLDNLFRLYHLNLQHCKRFKHFPVLPSQTDFPSETCKLPLPYLTYEDLVGLILYNCPELVEREHCNSMIFSWMIQIFQVCILLPSSSLLLNLFFSSKNSY* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00612 900 SUPERFAMILY "Winged helix" DNA-binding domain 433 531 IPR036390 -
Phac10g00612 900 ProSiteProfiles Leucine-rich repeat profile. 785 806 IPR001611 GO:0005515
Phac10g00612 900 SMART LRR_typ_2 783 808 IPR003591 -
Phac10g00612 900 SMART LRR_typ_2 760 782 IPR003591 -
Phac10g00612 900 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 190 - -
Phac10g00612 900 Pfam NB-ARC domain 207 428 IPR002182 GO:0043531
Phac10g00612 900 Pfam TIR domain 21 195 IPR000157 GO:0007165
Phac10g00612 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 456 IPR027417 -
Phac10g00612 900 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 719 IPR044974 GO:0006952
Phac10g00612 900 Gene3D - 363 446 IPR042197 -
Phac10g00612 900 Gene3D - 16 191 IPR035897 -
Phac10g00612 900 SUPERFAMILY L domain-like 551 869 - -
Phac10g00612 900 PRINTS Disease resistance protein signature 397 411 - -
Phac10g00612 900 PRINTS Disease resistance protein signature 225 240 - -
Phac10g00612 900 PRINTS Disease resistance protein signature 301 315 - -
Phac10g00612 900 PRINTS Disease resistance protein signature 630 646 - -
Phac10g00612 900 Gene3D - 192 357 IPR027417 -
Phac10g00612 900 SMART till_3 20 164 IPR000157 GO:0007165
Phac10g00612 900 Gene3D Ribonuclease Inhibitor 742 869 IPR032675 -
Phac10g00612 900 Gene3D Ribonuclease Inhibitor 539 731 IPR032675 -
Phac10g00612 900 ProSiteProfiles TIR domain profile. 19 189 IPR000157 GO:0007165
Phac10g00612 900 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 167 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00612 Phac-Chr10 7394699 7401098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00612 21 840 WRKY Transcription Factor Family AT4G12020 28.821 4.56e-77 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00612 - - pvu:PHAVU_010G055200g 1392.1