Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00610 ATGGCTTCTAACGCCATCATCCAATACACCTCTTCTTCTTCATCTCCTGCAACTCACATCTACGACGTTTTTGTGAGCTTCCGCGGTGAAGACACGCGCAACAACTTCACTGATTTTCTCTTTCATGCTCTCCGTACAAAAGGCATCCATGTCTTCAAAGATGATGAAGATCTCAAAAAAGGTGAATCCATTGCACCCGAGCTGCTGCAAGCCATTCAAGCCTCTCGACTTTTCATTGTTGTCTTCTCACAGAACTATGCTTCCTCCACCTGGTGCTTGCGTGAATTGGCGGAGATATGTAACTGCTTTGAAGCTTCGCCAAGACGTGTTATTATACCTATTTTTTATGATGTTCGTCCTTCGGTGGTGCGCAAACAGAGTGGACGTTATGAGAAAGCATTTGCAGAACACGAAAAGAGATTCAAAGAAGATGGAGTGAAGATGAAGGAAGTTCATAGATGGAGAGAAGCTCTCACACAAGTGGCTGATCTCTCTGGTTGGGATATCCGAAACAAGTCACAGTCTGAACAGATTGGAAAAATCATTCAAACCGTAATAAATATTTTGGGACCCAAAATGTCAAAACTTCCGAAGGATGAATTGGTTGGGATAGAGTCTCGGGTTGAAGAATTAACTAATCTTCTACGGTTAGATTTAGTTAATGATGTTCGAGTTGTTGGAATTAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGCTCAAGCTTTATACGAAAGAATCTCTCATCAATATGATTTTCATTGTTTTATTGATGATGTGAGCAAAATTTATAGAGATTCTAGTTTACTAGGTGTTCAAAAGGAGCTAATTACTCGGTGTCTAAGTGAGAAAAATCTTGAAATTTGTAATGTTATTGACGGAACATATTTGGTGTGGACTAGGCTGCACAATGCAAGAACACTTCTAGTTCTTGACAATGTTGATCAAGGTGCACAACTTAAGCTATTCACAGGGAACAGAGATATACGTAGATGTGTAGGTGGAGGGAGCAGAATCATCATAATTTCAAGGGATGAACATATTTTGAAGACACATGGAGTGGATGATGTTTATCAAGTCCAATTGTTGAGTTGGGAAAATGCTGTGCAGTTGTTTTGTATAAATGCTTTCAAAGTTAATTATATATTGGACGATTATGAAGAGTTGGCACGTGAGGTACTTTCACATGCTCAAGGTCATCCCTTGGGAATTGAAGTAATTGGATCATCTTTGTTTGGTCGAAATATCTCACAATGGAGAAGTGCATTGGGTAGGCTAAGATATAATAAAGACAAAAATATTATGAATGTTTTACGTATAAGTTTTGATCAGTTGGAAGAAGAAGAAAAAGAAATATTCCTTGATATTGCATGTTTCCTTCATAATCACTTCTATTATAATGAAATTTTAAGCATTCGTGGATTTGATTATGAAAATGGCATTCCAGCTCTCATCGAGAAATCTCTCATAACATGTGAATATGGGGATATTTATATGCATAGGTTGTTGATGGATTTGGGACAAAGTATTGTTAGAGAAAAATCACCTAAGGAACCTCTAAAGTGGAGTAGGTTATGGGATTGCAAAGATTTCGAGAAAGCTATGTTAGACAATGAGGCATCTGAAAATCTTGAAGTCATATATATTGAATGTGATTTGCTTTTGGGGACAGTGAGGGCAGATGGTCTATCGAAAGTTAGACACCTTAAGTTGCTTAAACTTGAAGATGTGAATTTTTCAGGCAGTCTCAATCATCTTTCGAATGAACTAGCATATCTTAATTGGAAGGAATATCCTTTTAAATGTTTGCCTCAAAGTTTTCAGCCAGAAAAACTAGTTGAGTTATACCTTGTTGGGAGCAGTATTAAGCGACTATGGGAAGGCACAAAGCCATTGCACAATTTGAAGCTTTTGGATCTCTCTTACTCTGAAGATTTAGTTGAGATGCCAGATGTTAGAGAGGCCCTAAATCTTGAAAAGATAAAACTTAAAGGATGTATAAAGCTCCCAAAAATCAATCCATCAATCGGTCTTTTGAAAAAGCTTTCATTGTTGAATTTGAGAAACTGCAAAAACCTAGTAAGCTTACCCAATACCATTTTGGGCCTGAATTCTCTTGAATATCTGGATGTCTCTGGATGTTCAAAACTTTGTTTGGTTGAAGCTACTATTCTTTCCCAATCAACATCCTTTTTTATAAAAAAAATGTTGTATTCCAGAGCACAAAGAGACTTAGTCAGCTATTTATTGCCCTCCTCTCCTACTTCCCCTTCTTCTCTCACTTGTTTGCGTGAACTCGATCTAAGCTTCTGTAACTTAGTTCGAATCCCTGATGCCATTGGAAAGTTAAGTTGCCTAGAACACCTAAATTTGGAGGGTAACAATTTTACCACACTTCCCAACCTCGATAACCTTTTCAGACTGTATCATTTAAACTTACAACATTGCAAGCGATTCAAACACTTTCCTGTTCTCCCTTCCCAAACCGACTTTCCCTCAGAAACTTGCAAACTTCCACTACCATATTTGACATATGAAGATTTGGTAGGACTAATCCTTTATAATTGCCCAGAATTAGTTGAGAGGGAACACTGTAATAGCATGATTTTTTCGTGGATGATACAAATTTTTCAGTCTTACGAGGCGAGGTGCTCAAGAAACACATGTAGTCTCAAATTACGTCCAAATATTGCCTGTGTTATCCCAGGAAGTGAAATACCGAGGTGGTTCAACAATCAGTTTGGGAGCATGGACAATTCAATAAGGATTGATACCTCTCCTGTTATGCATGACAATAATTGGATTGGTGTAATGTGTTGCGCAATATTTCACATGGACATTGAAAGAGATATGACTGGTTATAGATCCATAGATCGTAGTGCTAGAATTCCTCCAATCGATTTGAGGAGCGATCTAGTCATCGACCATTCGGATCATATGTGGCTATTTTATTTGTCTCATCAAGAGTTTGGTGAACGACGTTATGATTGCAGATGGTACACATCTTATAATGGGGTTATTAGTGTGGAATTTACAAAATTGATGATGGACACGGGCGAATTCGAGAAGGGAGAACACCAATATGTTAAGGTGTATGTGAAGAAATATGGGTATCGGTGGGTATATGAGAAAGATCGACAACTACCAAACTCAGGATCAAGGATAGACATCCCACAGTTCTTTGGAACATCTTTACACGAGTACTCCTTTAAGGCATGTAGCCAAGAAGTTATTTTGCAATTGATGCAGTAG 3252 0.3813 MASNAIIQYTSSSSSPATHIYDVFVSFRGEDTRNNFTDFLFHALRTKGIHVFKDDEDLKKGESIAPELLQAIQASRLFIVVFSQNYASSTWCLRELAEICNCFEASPRRVIIPIFYDVRPSVVRKQSGRYEKAFAEHEKRFKEDGVKMKEVHRWREALTQVADLSGWDIRNKSQSEQIGKIIQTVINILGPKMSKLPKDELVGIESRVEELTNLLRLDLVNDVRVVGISGMGGIGKTTLAQALYERISHQYDFHCFIDDVSKIYRDSSLLGVQKELITRCLSEKNLEICNVIDGTYLVWTRLHNARTLLVLDNVDQGAQLKLFTGNRDIRRCVGGGSRIIIISRDEHILKTHGVDDVYQVQLLSWENAVQLFCINAFKVNYILDDYEELAREVLSHAQGHPLGIEVIGSSLFGRNISQWRSALGRLRYNKDKNIMNVLRISFDQLEEEEKEIFLDIACFLHNHFYYNEILSIRGFDYENGIPALIEKSLITCEYGDIYMHRLLMDLGQSIVREKSPKEPLKWSRLWDCKDFEKAMLDNEASENLEVIYIECDLLLGTVRADGLSKVRHLKLLKLEDVNFSGSLNHLSNELAYLNWKEYPFKCLPQSFQPEKLVELYLVGSSIKRLWEGTKPLHNLKLLDLSYSEDLVEMPDVREALNLEKIKLKGCIKLPKINPSIGLLKKLSLLNLRNCKNLVSLPNTILGLNSLEYLDVSGCSKLCLVEATILSQSTSFFIKKMLYSRAQRDLVSYLLPSSPTSPSSLTCLRELDLSFCNLVRIPDAIGKLSCLEHLNLEGNNFTTLPNLDNLFRLYHLNLQHCKRFKHFPVLPSQTDFPSETCKLPLPYLTYEDLVGLILYNCPELVEREHCNSMIFSWMIQIFQSYEARCSRNTCSLKLRPNIACVIPGSEIPRWFNNQFGSMDNSIRIDTSPVMHDNNWIGVMCCAIFHMDIERDMTGYRSIDRSARIPPIDLRSDLVIDHSDHMWLFYLSHQEFGERRYDCRWYTSYNGVISVEFTKLMMDTGEFEKGEHQYVKVYVKKYGYRWVYEKDRQLPNSGSRIDIPQFFGTSLHEYSFKACSQEVILQLMQ* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00610 1083 SUPERFAMILY L domain-like 551 905 - -
Phac10g00610 1083 Gene3D Ribonuclease Inhibitor 742 856 IPR032675 -
Phac10g00610 1083 SUPERFAMILY "Winged helix" DNA-binding domain 433 531 IPR036390 -
Phac10g00610 1083 ProSiteProfiles Leucine-rich repeat profile. 785 806 IPR001611 GO:0005515
Phac10g00610 1083 SMART LRR_typ_2 783 808 IPR003591 -
Phac10g00610 1083 SMART LRR_typ_2 760 782 IPR003591 -
Phac10g00610 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 456 IPR027417 -
Phac10g00610 1083 Gene3D - 363 446 IPR042197 -
Phac10g00610 1083 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 190 - -
Phac10g00610 1083 Pfam C-JID domain 901 1046 IPR045344 -
Phac10g00610 1083 Gene3D - 192 356 IPR027417 -
Phac10g00610 1083 Gene3D - 16 191 IPR035897 -
Phac10g00610 1083 Gene3D Ribonuclease Inhibitor 538 741 IPR032675 -
Phac10g00610 1083 PRINTS Disease resistance protein signature 225 240 - -
Phac10g00610 1083 PRINTS Disease resistance protein signature 630 646 - -
Phac10g00610 1083 PRINTS Disease resistance protein signature 301 315 - -
Phac10g00610 1083 PRINTS Disease resistance protein signature 397 411 - -
Phac10g00610 1083 Pfam TIR domain 21 195 IPR000157 GO:0007165
Phac10g00610 1083 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 167 IPR035897 -
Phac10g00610 1083 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 720 IPR044974 GO:0006952
Phac10g00610 1083 SMART till_3 20 164 IPR000157 GO:0007165
Phac10g00610 1083 Pfam NB-ARC domain 207 428 IPR002182 GO:0043531
Phac10g00610 1083 ProSiteProfiles TIR domain profile. 19 189 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00610 Phac-Chr10 7394699 7401098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00610 21 840 WRKY Transcription Factor Family AT4G12020 28.821 3.22e-77 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00610 - - pvu:PHAVU_010G055200g 1691.78