Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00590 ATGAATCACCAAAGATATCATGTTAGGAGGGGCCACAGATTTGTCCATCGGCATTACCATCATCATGCACCACCTGTGCAAGTGCAAGAGATCAGAGCTCACTCCAACTTTCATCCTCGTAGAGGCAACATGCCTAATCATTCTCCTAGAGGTCACTCCAACTTTCATGCTCGTAGAGACAACATGCAAGATCTTCTTCAGGAAGTTGTTTCATTCCGTTACCATCATAGTCATATGCAATTGGACATAAACAACATGTCACATGAGGCAAGTCTGTTATGCATCGATCTTCTTATTTTAGGTGAACGGATTGGCAATGTAAAGAGGGATTCGTCAGAAGAAACTATTGCAAGACAAATGCTGACAAAAACTTATCTACTACCTAATAACTTGGAGGGGTCAACTTCTGAGGAACAGGAAATTAATCTTTGCATAATATGTCAGGATGAATATAAGAACAAAGAGGAGATTGGAATTCTTCAATGCAGACATGAATACCATGCAGATTGTATAAGGAGATGGTTACAAGAGAAAAATGTCTGTCCCCTATGCAAATCAAAGGCATTGGCTATTTGA 576 0.3993 MNHQRYHVRRGHRFVHRHYHHHAPPVQVQEIRAHSNFHPRRGNMPNHSPRGHSNFHARRDNMQDLLQEVVSFRYHHSHMQLDINNMSHEASLLCIDLLILGERIGNVKRDSSEETIARQMLTKTYLLPNNLEGSTSEEQEINLCIICQDEYKNKEEIGILQCRHEYHADCIRRWLQEKNVCPLCKSKALAI* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00590 191 CDD RING-H2_RNF24-like 143 188 - -
Phac10g00590 191 Pfam Ring finger domain 143 185 IPR001841 -
Phac10g00590 191 ProSiteProfiles Zinc finger RING-type profile. 144 185 IPR001841 -
Phac10g00590 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 189 IPR013083 -
Phac10g00590 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 189 IPR045191 GO:0061630
Phac10g00590 191 SMART ring_2 144 184 IPR001841 -
Phac10g00590 191 SUPERFAMILY RING/U-box 143 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00590 Phac-Chr10 7182002 7182767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00590 65 189 C3H Transcription Factor Family AT2G15530 40.945 2.31e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00590 K19041 - pvu:PHAVU_010G052600g 249.98