Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00560 ATGGCCACCACAACAACATCATGCGATTTCTCATCGTTGGAATCAATTCAACACTATCTCCTTGAGCTTGAACCAGATTCCAACACCCTCATGAACGTTTACAGCCCCCAAGTTTTCTACTCTCCAATGTGCAAGCCGTTCCCGAGCCCTACTTTGCAGGGTGCCCACGATGCAGAGAGCTTGCTGACACGCAAGGTAAAAGCGCGTGAGGGGCACGCGCCGCCGGTGTGGAAGCGTTTCCGTGGTGTGAGGCGGAGGCCGTGGGGGAAGTTCGCGGCAGAGATAAGGGATCCGAAGAAGAATGGTGCGAGAATTTGGCTCGGAACTTATGAAACTGAAGAAGAAGCTGGTTTGGCTTATGATAAAGCTGCATTTGAGATGCGTGGTAACAAAGCTAAGCTGAATTTTCCTCATCTTATTGACTCTGATGTGGCTCTGAAGGGCGTTAGAATAAGCAAAGGTTCGAAAGAAAGCACGTTGGAATCTTATTCATCGTTGTCACCATCTTCAGATGCCGAAGAAGGGTCGAAGAAAAGGAAGAACTTGGTTGAGTTGTTGAACAGGTTGGCCAAGAACAGAAGGCAAGTGCAGGTGTTTCAAACCAGTTTGCACTCAAATGGTTTCTGTGTTCATCAACAGTTTAATTAG 648 0.4784 MATTTTSCDFSSLESIQHYLLELEPDSNTLMNVYSPQVFYSPMCKPFPSPTLQGAHDAESLLTRKVKAREGHAPPVWKRFRGVRRRPWGKFAAEIRDPKKNGARIWLGTYETEEEAGLAYDKAAFEMRGNKAKLNFPHLIDSDVALKGVRISKGSKESTLESYSSLSPSSDAEEGSKKRKNLVELLNRLAKNRRQVQVFQTSLHSNGFCVHQQFN* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00560 215 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Phac10g00560 215 SUPERFAMILY DNA-binding domain 79 138 IPR016177 GO:0003677
Phac10g00560 215 FunFam Ethylene-responsive transcription factor 2 78 138 - -
Phac10g00560 215 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Phac10g00560 215 PANTHER DNA-BINDING DOMAIN 67 176 IPR044808 GO:0003700|GO:0009873
Phac10g00560 215 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700|GO:0006355
Phac10g00560 215 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Phac10g00560 215 PRINTS Ethylene responsive element binding protein signature 119 139 IPR001471 GO:0003700|GO:0006355
Phac10g00560 215 CDD AP2 78 139 IPR001471 GO:0003700|GO:0006355
Phac10g00560 215 Pfam AP2 domain 79 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00560 Phac-Chr10 7022280 7023064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00560 28 151 AP2-EREBP Transcription Factor Family AT2G44840 56.000 4.00e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac10g00560 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00560 K09286 - gmx:100527194 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g00560 10 7022280 7023064 Phac10g00560 10 7022280 7023064 ECH