Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00558 ATGAACCCTCATGCTTCAAACACCAACGAGAATGTCCTTGATCTCTCTGAGCTCCCTGCAACGACGCTGTTCAGCCGTAGCTCCAGCTTCCGGAGCATTTTCTTCGCGGAGAACTGGGCGGAGCTGCCGTTGAAGGAGGACGACGCCGACGACATGGTTATCTTCGGCGCTTTGCGCGAGGCCGCAGCCACCACCGGATGGTTCCCCGCAAATGGCAATGGGGTGAGCAATGCAGCAGTTAAAATGGAAAGTGAGGGTCAAAGCAGTGACACTAATGCCGCGAGTGGAATTCAGCCGCCTCCGGTGAAAGGGTTGAGCTACCGCGGCGTGCGGAGGAGGCCATGGGGGAAGTACGCGGCGGAGATAAGAGATGCTAAGAGGAATGGTGGGAGAGTGTGGCTTGGAACCTATGAAACTGCTGAGGACGCAGCTTTGGCTTATGATCGAGCTGCATTTAAAATGCATGGCTCCAAAGCAAAGCTCAATTTTCCTCATTTGATTGGTTCGGATGATGCAGAACTAATTAGGGTTACATCAAAGAAACGTTCATTGGAGGTTTTATCACCTAATTTATCGTCGTCGTTGGTGACTGCAAAACGGAGTAAAGATAATTCTTTGGTTGATTCGGAGATGAATGACTTGGATATGTGGTAG 654 0.5092 MNPHASNTNENVLDLSELPATTLFSRSSSFRSIFFAENWAELPLKEDDADDMVIFGALREAAATTGWFPANGNGVSNAAVKMESEGQSSDTNAASGIQPPPVKGLSYRGVRRRPWGKYAAEIRDAKRNGGRVWLGTYETAEDAALAYDRAAFKMHGSKAKLNFPHLIGSDDAELIRVTSKKRSLEVLSPNLSSSLVTAKRSKDNSLVDSEMNDLDMW* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00558 217 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Phac10g00558 217 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Phac10g00558 217 MobiDBLite consensus disorder prediction 81 96 - -
Phac10g00558 217 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
Phac10g00558 217 SUPERFAMILY DNA-binding domain 107 165 IPR016177 GO:0003677
Phac10g00558 217 CDD AP2 107 166 IPR001471 GO:0003700|GO:0006355
Phac10g00558 217 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Phac10g00558 217 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Phac10g00558 217 FunFam Ethylene-responsive transcription factor 2 106 165 - -
Phac10g00558 217 ProSiteProfiles AP2/ERF domain profile. 106 164 IPR001471 GO:0003700|GO:0006355
Phac10g00558 217 PANTHER DNA-BINDING DOMAIN 85 183 IPR044808 GO:0003700|GO:0009873
Phac10g00558 217 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00558 Phac-Chr10 6977394 6978161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00558 23 210 AP2-EREBP Transcription Factor Family AT2G44840 49.468 3.99e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac10g00558 AP2 3.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00558 K09286 - gmx:100804762 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac10g00558 10 6977394 6978161 Phac10g00558 10 6977394 6978161 ECH
Phac10g00558 10 6977394 6978161 Phac8g00658 8 4225731 4226784 PCT