Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00483 ATGAAGAAGAAAGGTGTTGATGAATTTCCTTTCTGTGTGCATTTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCCCTGGAGGCTGCTAGGATTGCTTGTAACAAGTACATGGCAAAATTTGCTGGGAAGGATGCATTCCACTTGAGGGTTAGGGTGCATCCCTTCCATGTTCTTAGGATCAACAAGATGCTTTCGTGTGCCGGAGCCGATCGGCTTCAAACCGGCATGAGAGGTGCCTTTGGAAAGCCACAGGGTGTTTGTGCTAGAGTGGCTATTGGCCAGGTCCTGCTCTCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCGCAAGAGGCCCTCCGCCGGGCTAAATTCAAGTTCCCCGGCCGCCAAAAGATTATAGTTAGCAGGAAGTGGGGGTTCACCAAGTTTAACCGCACTGACTATTTGAAGTTAAAGTCAGAGAACAGGATTATGCCTGATGGTGTTAATGCCAAGCTTCTTGGGTGCCATGGACCACTGGCTAATCGCCAACCAGGAAGAGCCTTTTTGTCCAGTGCCTAG 549 0.4991 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKLKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLSSA* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00483 182 FunFam 60S ribosomal protein L10 1 169 - -
Phac10g00483 182 Gene3D Ribosomal protein L10e/L16 1 141 IPR036920 GO:0003735|GO:0005840|GO:0006412
Phac10g00483 182 SUPERFAMILY Ribosomal protein L16p/L10e 3 139 IPR036920 GO:0003735|GO:0005840|GO:0006412
Phac10g00483 182 ProSitePatterns Ribosomal protein L10e signature. 71 92 IPR018255 GO:0003735|GO:0005840|GO:0006412
Phac10g00483 182 Gene3D - 142 177 - -
Phac10g00483 182 Pfam Ribosomal protein L16p/L10e 13 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
Phac10g00483 182 CDD Ribosomal_L16_L10e 4 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
Phac10g00483 182 PANTHER 60S RIBOSOMAL PROTEIN L10 1 176 IPR001197 GO:0003735|GO:0005840|GO:0006412
Phac10g00483 182 FunFam 60S ribosomal protein L10, putative 138 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00483 Phac-Chr10 6116984 6120017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00483 1 181 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 88.398 2.57e-121 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00483 K02866 - pvy:116105818 364.385