Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00482 ATGGGAAGAAGACCTGCAAGGTGTTATCGTCAAATTAAGAACAAGCCCTACCCGAAATCGCGGTTTTGCCGTGGTGTTCCTGATCCTAAGATCAGGATTTATGATGTTGGCATGAAGAAGAAAGGTGTTGATGAATTTCCTTTCTGTGTGCATTTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCCCTGGAGGCTGCTAGGATTGCTTGTAACAAGTACATGGCAAAATTTGCTGGGAAGGATGCATTCCACTTGAGGGTTAGGGTGCATCCCTTCCATGTTCTTAGGATCAACAAGATGCTTTCGTGTGCCGGAGCCGATCGGCTTCAAACCGGCATGAGAGGTGCCTTTGGAAAGCCACAGGGTGTTTGTGCTAGAGTGGCTATTGGCCAGGTCCTGCTCTCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCGCAAGAGGCCCTCCGCCGGGCTAAATTCAAGTTCCCCGGCCGCCAAAAGATTATAGTTAGCAGGAAGTGGGGGTTCACCAAGTTTAACCGCACTGACTATTTGAAGTTAAAGTCAGAGAACAGGATTATGCCTGATGGTGTTAATGCCAAGCTTCTTGGGTGCCATGGACCACTGGCTAATCGCCAACCAGGAAGAGCCTTTTTGTCCAGTGCCTAG 660 0.4924 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKLKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLSSA* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00482 219 Gene3D Ribosomal protein L10e/L16 1 216 IPR036920 GO:0003735|GO:0005840|GO:0006412
Phac10g00482 219 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Phac10g00482 219 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Phac10g00482 219 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Phac10g00482 219 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Phac10g00482 219 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Phac10g00482 219 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Phac10g00482 219 Coils Coil 218 219 - -
Phac10g00482 219 FunFam 60S ribosomal protein L10 1 206 - -
Phac10g00482 219 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00482 Phac-Chr10 6116984 6120017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00482 1 219 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.215 1.42e-144 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00482 K02866 - pvy:116105818 443.736