Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00475 ATGGAAGAAGACTCATGGGAGACTTGGATTTCTTCCTTGGAGATGGGTGAGGACAATTTCATTGGCCATTCTCACATCAAATCACTTGATGAAGATAAGTTCCTCAATGGGATTGTACTTGAGCCACTAAATTTCTCATTTCACAACTCTTCTACTAATAATGGTAATGATAATAATAGTAAGAAAGTTTTTTCCATGGGAAGTAGTTGCTTGTCCTATGAAGATGCAAGCTTTGATGAGAGGCATGGGAAAATGCTGAAGAGTAATAGCTCAAGCTCCATCATTTCTCAAGATGTTGTTGCTAACAAGAATGCTGCTTCTTCTTCTTCTTCTTCTTCAGCACCATCCTCATCTTCTTCCTTCATTTTGTCCTTTGAAAACTCAACCATGAAACCTTCTTCTCTCCATCATAGACCTAATGATGATCATCATCATGGTGATTGCCATAGGTATTTTGGTGGGGATGCCCTATGTTCTTCAGTTCTGAGCTCAGAGAGTGAGCATGTCATCACCAAAGCAAAGGCCAAACAAGGTGACAACAAGAAGTGTAGAAGCTCATCTGAGATTCAAGATCACATCATGACTGAGAGAAAAAGAAGACAGGAACTCACTGAAAGGTTCATAGCACTTTCTGCCACCATACCTGGATTGAAGAAGACAGACAAGGCTTATATACTTAGGGAAGCAATGATATACATGAAACAACTTGAAGAGAGAGTGATTGAGCTAGAAAATCAGAACAAGAGGAAGAACACAGATTCAAGAATATTGATAAAGAAATATTCCCAAGTGTGTTCAAGAGAAGAAGTAGAAGCCACATCATGTGATGAAAAAACCAAGTCTCATAATATATCAACTCCTCCACTGCCTCAGGTTGAAGCAAGAGTGTTGGAAAAAGAGGTTCTCATTGGAATTCACTGCCACAAACAAAAGGACATTGTGCTCAAAATCATGGCTTTGCTCCAAAATCATCATCTCTCTCTTGCTAGCAGCAGTGTCTTGCCCTTTGGAACTTCCACTCTCAAAGTTACCATCATTGCCCAGATGGAAGAAAAATACTGCATGACAGTGAATAATCTTGTAAAAAGTCTGAGGCAAGCACTCTTGAAAATCACATGA 1119 0.3941 MEEDSWETWISSLEMGEDNFIGHSHIKSLDEDKFLNGIVLEPLNFSFHNSSTNNGNDNNSKKVFSMGSSCLSYEDASFDERHGKMLKSNSSSSIISQDVVANKNAASSSSSSSAPSSSSSFILSFENSTMKPSSLHHRPNDDHHHGDCHRYFGGDALCSSVLSSESEHVITKAKAKQGDNKKCRSSSEIQDHIMTERKRRQELTERFIALSATIPGLKKTDKAYILREAMIYMKQLEERVIELENQNKRKNTDSRILIKKYSQVCSREEVEATSCDEKTKSHNISTPPLPQVEARVLEKEVLIGIHCHKQKDIVLKIMALLQNHHLSLASSSVLPFGTSTLKVTIIAQMEEKYCMTVNNLVKSLRQALLKIT* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00475 372 SMART finulus 193 242 IPR011598 GO:0046983
Phac10g00475 372 Gene3D - 187 258 IPR036638 GO:0046983
Phac10g00475 372 Pfam Helix-loop-helix DNA-binding domain 191 237 IPR011598 GO:0046983
Phac10g00475 372 Coils Coil 226 253 - -
Phac10g00475 372 PANTHER BHLH TRANSCRIPTION FACTOR 54 370 - -
Phac10g00475 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 257 IPR036638 GO:0046983
Phac10g00475 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00475 Phac-Chr10 5997235 6002624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00475 125 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.638 1.67e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac10g00475 HLH 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00475 - - vra:106773267 455.677