Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00464 ATGGCTTCTCCGCCACCGTTAACGCTAAACGTCGTCGGATCAGACACGGACACCACGTTCCCAACCGTCGCTTCCAGTTCTCTAACGCCTCCGTCACCGCGCCGTTCGTCTCCGTTACAGAGCCTCAGTCCCAGCATTCTCATTATCGTTACGGTCCTCGCCGTCACCGTTATTGTTTCTCTCGCGCTTTGCTTCCTCCTCCGCCACCTCAACCGCCGCTGCCTCCGCCGCTTCTCCTCCTCCTCCGCCGCGCCCTCCGCATCCGCCTCTGCCACGCCGATATTCTCCTCCAGCCGCCGCATCTCGCCGGAGATTGTGCACTCCTCGTCGGCCGCCGCTGCCTCTGTCATCGACACGCTGCCGCTCTTCACGTTCTCCTCCGTCACGCGCCGCTCCGCCTCCGCTGCCGCCGACTGCGCGGTCTGCCTCTCTAAGTTCCACCACCACGACCTCCTCCGACTCCTCCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACCTGGCTCCAGTCCAACCTCTCGTGTCCGCTCTGCCGCTCTCCCATCGCCGCCGCGGAATCCGACCTCGCGAAAATCCTCCGCCCGCCGTCCTCAGCCGCCGGCAGCAGCGACAGCTTCCGCCTCGAGTTAGGCAATATCAGCCGCCGTGGCGCCGAAGGCGCCCCCGCCGCTCGCAGCGATTCACGCTCCCGGTCCTATTCCATTGGTTCGTTCGAGTATTTGGTGGACGATGACTCCGAGGTTGCGTTCAGCCACGCCCGCCGGAGAAGCGAGGACGATGCGAAGGAGTTTCCGGCGGCGGAGTCTCAGACTCCGGCGAATCATAACGAGGCGAGTCTGGCCGGCGAGGTTGCCGGCGTTAGGAGCTGGCTTAAGGACTACATGGATAGGTTTTCCGCTTCCATCTCGTCGCGAACGGCGTCGTTTCGAAGCTCTGGAAGGTTCTTCAGCGGTGGCGGGAGCAGTCGGCGAAGCGACGTGGTTCCAGTGGTGGCTGCGGAATACGACTTGGAAGGGAACCGAATTGGCGAAGAAATCAGCGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1077 0.6295 MASPPPLTLNVVGSDTDTTFPTVASSSLTPPSPRRSSPLQSLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRFSSSSAAPSASASATPIFSSSRRISPEIVHSSSAAAASVIDTLPLFTFSSVTRRSASAAADCAVCLSKFHHHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSPIAAAESDLAKILRPPSSAAGSSDSFRLELGNISRRGAEGAPAARSDSRSRSYSIGSFEYLVDDDSEVAFSHARRRSEDDAKEFPAAESQTPANHNEASLAGEVAGVRSWLKDYMDRFSASISSRTASFRSSGRFFSGGGSSRRSDVVPVVAAEYDLEGNRIGEEISEMFRWLSGV* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00464 358 CDD RING-H2_EL5-like 138 181 - -
Phac10g00464 358 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Phac10g00464 358 Pfam Ring finger domain 138 181 IPR001841 -
Phac10g00464 358 SMART ring_2 139 180 IPR001841 -
Phac10g00464 358 MobiDBLite consensus disorder prediction 21 40 - -
Phac10g00464 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 190 IPR013083 -
Phac10g00464 358 FunFam E3 ubiquitin-protein ligase ATL4 112 186 - -
Phac10g00464 358 SUPERFAMILY RING/U-box 128 186 - -
Phac10g00464 358 MobiDBLite consensus disorder prediction 254 277 - -
Phac10g00464 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 38 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00464 Phac-Chr10 5880909 5882602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00464 25 210 C3H Transcription Factor Family AT4G28890 33.333 8.87e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00464 K10663 - gmx:100817751 441.81