Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00380 ATGGAACATGAGCAGAAAACCATCACCACCAAGTTCGTGAAATCCAAATTCTTCTTCCCCAAAGTTATTCGCATTTCAGCAACGGATCACAACGCCACAGACTCCTCTAGCGAGGAAGAAGACGAAGAAGGGAGGCTTCTTCATCTTCATAGAGTTAAAAAAGTGGTTAATGAGATAAGAATTGTGCATGCAGACAAAACAAAAGGACACGACAACAATAGTTGTTGTTGTTCAACCATATACAACGAAAGTATGGAAGAACAACACCACCATCATCAACAAAGACAGAATATTAAAGGGCACAGGTTTCGGGGTGTGCGCCAACGGCCTTGGGGACGTTGGGCCGCCGAGATAAGAGACCCTTTCCGGCGAAAGCGAGTGTGGCTTGGAACCTTCGACACTGCGGAAGAAGCTGCTATGGTTTACGACAGAGCTGCTATAAGCTTCAGAGGTGCCGATGCTGTAACTAATCTCATCAAACCGGCGCTAAAAGACAGTGAAAGTGTTGTTAAAAGGACGAGTTGTTGCGCATGTGACTCACCCACTTCCGTTCTCTTTTTCCAGCCTTGGATGGAACCTTTGTCTTCGGAAGAAACCTTCAAAGAAGAAGTGTTTGATGGATTAAAAGATGAAGTTGATAGTTTCTTGTTTTCTGATCATGCTCTTTATGATCAACCTCTTCCTACTATGTTTTCTGACGTTGATGTTTCATTGGATGAGGATCTTGAATCATGTAAATGGGATGTAGATAGTTATTTCACTGATGATACTTTTCAATAA 780 0.4269 MEHEQKTITTKFVKSKFFFPKVIRISATDHNATDSSSEEEDEEGRLLHLHRVKKVVNEIRIVHADKTKGHDNNSCCCSTIYNESMEEQHHHHQQRQNIKGHRFRGVRQRPWGRWAAEIRDPFRRKRVWLGTFDTAEEAAMVYDRAAISFRGADAVTNLIKPALKDSESVVKRTSCCACDSPTSVLFFQPWMEPLSSEETFKEEVFDGLKDEVDSFLFSDHALYDQPLPTMFSDVDVSLDEDLESCKWDVDSYFTDDTFQ* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00380 259 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Phac10g00380 259 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Phac10g00380 259 PIRSF PTI6 2 257 IPR017392 GO:0003700
Phac10g00380 259 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Phac10g00380 259 SUPERFAMILY DNA-binding domain 102 158 IPR016177 GO:0003677
Phac10g00380 259 Gene3D AP2/ERF domain 101 159 IPR036955 GO:0003700|GO:0006355
Phac10g00380 259 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 188 - -
Phac10g00380 259 CDD AP2 102 157 IPR001471 GO:0003700|GO:0006355
Phac10g00380 259 Pfam AP2 domain 102 151 IPR001471 GO:0003700|GO:0006355
Phac10g00380 259 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700|GO:0006355
Phac10g00380 259 FunFam Ethylene-responsive transcription factor 2 101 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00380 Phac-Chr10 4972948 4974121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00380 4 196 AP2-EREBP Transcription Factor Family AT4G27950 39.111 4.01e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac10g00380 AP2 5.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00380 - - pvu:PHAVU_010G035200g 452.981