Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00326 ATGGGGCCAAACGCTGCGGCGGCGAAACAAGCGGAGAAGCTCCGAATTAACGGCAATACTTACTTCAAGAAAGACCGTTTTGGTGCTGCCATCGATGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGATTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAATGACTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGTTGGACAGCAATTCAGCCCACTATATGTTGGGGCTCGCTTTGCTTCAGAGAAAAGAATCTGCCAAGGGAATAAAAGAATTGGAGAAGGCTTTGGATCTCGGGAGGGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCATGAGTGGGAGCGATTATCGTCCAAACGATCATGGGAATTGCAGAGTTTGAAAGAAGCTTGCGAGTCTGCTCTGAAGGAAAAACATTTTCTCGAATTCTCCCAAAAGGAAGGATTTGTAGATGATCCTACTACTTCTCATTCGGAACAATTAGAGGCTTTAGAAGTAGTCTTCAATATAGCTGCAGAAGCCGATACACCTACTGAGGTGCCAGATTATTTATGTTGTAGAATCACACTCGACATTTTTCATGATCCTGTAATCACCCCAAGTGGGCTTACATATGAAAGAGCAGTGATTCTTGAACACCTTCAGAAGGTGGGTAAATTCGACCCAATCACGCGGGAACCACTTGATCAATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCAGTTCAGGCATTCTTGGACAAACATGGTTGGGCTTACAAGGTAGACTAA 831 0.4573 MGPNAAAAKQAEKLRINGNTYFKKDRFGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWERVEEDSRKAIQLDSNSAHYMLGLALLQRKESAKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYHEWERLSSKRSWELQSLKEACESALKEKHFLEFSQKEGFVDDPTTSHSEQLEALEVVFNIAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDQSQLVPNLAIKEAVQAFLDKHGWAYKVD* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00326 276 ProSiteProfiles U-box domain profile. 198 272 IPR003613 GO:0004842|GO:0016567
Phac10g00326 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 6 274 IPR045200 GO:0000209|GO:0061630
Phac10g00326 276 SMART tpr_5 45 78 IPR019734 GO:0005515
Phac10g00326 276 SMART tpr_5 11 44 IPR019734 GO:0005515
Phac10g00326 276 SMART tpr_5 79 110 IPR019734 GO:0005515
Phac10g00326 276 SMART Ubox_2 202 265 IPR003613 GO:0004842|GO:0016567
Phac10g00326 276 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Phac10g00326 276 SUPERFAMILY TPR-like 10 109 IPR011990 GO:0005515
Phac10g00326 276 Gene3D Tetratricopeptide repeat domain 4 139 IPR011990 GO:0005515
Phac10g00326 276 Pfam U-box domain 199 271 IPR003613 GO:0004842|GO:0016567
Phac10g00326 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 275 IPR013083 -
Phac10g00326 276 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Phac10g00326 276 SUPERFAMILY RING/U-box 192 273 - -
Phac10g00326 276 CDD RING-Ubox_CHIP 199 269 IPR045202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00326 Phac-Chr10 4391047 4400551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00326 4 275 U-box Gene Family AT3G07370 68.613 1.31e-139 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00326 K09561 - gmx:100796519 525.398