Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00315 ATGGAATCGGCGTCTTCATCATCCAAACTCCCACCGATGTACGATGTGCTCATCAACTTCAATGGAGAAGACATCCAAAGGAAATTTGTTTCTCATCTCGATTCTGCCCTCTCTGCTGTTGCCCTCACCACCTTCCTTCACCACCAGAATGCAGACAACCCAATTCACATCCAACAACCTATTCTCAATCTATGTCGTGTAGCAATTGTTGTTTTCACCAAATCCTATTCTCAATCTGCTTGGTGTCTTCATCAACTTCAACAAATCATCAAATGGAACCAAACTTATTGCCGACATGTTCTGCCCGTTTATTATGAAATTCTGCCATCTGATGTACGTCTTCAGATGGGTGATTTTGGAAAAGCCTTCAAAGCAACTGCTCAGCAAACATTCTCAGGACAACAACTGGAGCATGGCATGTCGAGGTGGAGCCTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAACTAGTGGATAAAATTGTTAAGACCGTTCTTCATTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATTCCACGTGGAGGATCTGATTCGAACTATCAAATATAAATCCACGGAAGTTTGTATGATAGCAATATGTGGACAGGGAGGATCTGGCAAAACCACCCTTGCCAAAGCCATCTACCATCAAATTCATGGTACATTCACAGAGAAAAGTTTCGTTGAAGGTATTGGGCAATTTAGCGGAATAAGAGGGGATCTTCGTTTACTAGAACAACTCCTTTCAGATGTCCTAAAAACAAAGGTGAAGACAGAGAGCTTTGAGATGGGAAGAAGTATGATTCGGGAAAGACTTTCTGGGAAAAGGGTGCTCATTGTACTTGACGATGTGCCTGAGTTCAATGGACAATTACTATGGGAATGCCGTCATTGGTTCGGAGGAGGAAGTGTAATAATTATTACAACAAGACCTGAAAACCTAGTGAGGATATATGAAGCTGATTCTGTTCTTCAGGTAAAGTTAATGAACGCAAACGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTGGAGAAGCAAAACCAAAACAAGAATACCACTTCCTTGCAAAAAGAGTAGTTTCTTATTGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGAAGTTATTTATATCAAAGGACGAAAGAAGAATGGAATTCAGTATTGTTACTATTAGACAATATTCCCCAGCGCGATATTCAATGGAAATTGAAAATAAGTTTCGACGGTTTAAGCAATCAAATGCAAAAGGATTTATTTCTTGATGTATGTTGTTCCTTTGTTGGTAAGAGCAGAACCTATGTCACGAAGATCCTAAATGGCTGTGGAATAGACGCTGATAGTGGAATAAGAGTTCTCATAAAGCATAGTCTCATACAAATTAATAAGAACAACAAATTAATAATGCATTCGTTGCTACGAGAAATGGGAAGAGAAATTATTCGTCAAATTTCAACAAAGGAACCTGGGAAGAACAGTCAACTGTGGTGGTTTGATAATGATGCAGAATATGCACTGTCAGAGAATACGCTCTTTTCATCAAAGGGCACAAAAGTCATTCAGAGACGCCATCCTTTACCGTCATTGATGTAA 1629 0.4009 MESASSSSKLPPMYDVLINFNGEDIQRKFVSHLDSALSAVALTTFLHHQNADNPIHIQQPILNLCRVAIVVFTKSYSQSAWCLHQLQQIIKWNQTYCRHVLPVYYEILPSDVRLQMGDFGKAFKATAQQTFSGQQLEHGMSRWSLTKAANFFGWDESNHRSDAELVDKIVKTVLHLPVLSATKFPVGLQFHVEDLIRTIKYKSTEVCMIAICGQGGSGKTTLAKAIYHQIHGTFTEKSFVEGIGQFSGIRGDLRLLEQLLSDVLKTKVKTESFEMGRSMIRERLSGKRVLIVLDDVPEFNGQLLWECRHWFGGGSVIIITTRPENLVRIYEADSVLQVKLMNANESLELLSWHAFGEAKPKQEYHFLAKRVVSYCGGLPLALEVIGSYLYQRTKEEWNSVLLLLDNIPQRDIQWKLKISFDGLSNQMQKDLFLDVCCSFVGKSRTYVTKILNGCGIDADSGIRVLIKHSLIQINKNNKLIMHSLLREMGREIIRQISTKEPGKNSQLWWFDNDAEYALSENTLFSSKGTKVIQRRHPLPSLM* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00315 542 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 132 IPR035897 -
Phac10g00315 542 Pfam TIR domain 14 173 IPR000157 GO:0007165
Phac10g00315 542 SMART till_3 13 155 IPR000157 GO:0007165
Phac10g00315 542 Pfam NB-ARC domain 191 406 IPR002182 GO:0043531
Phac10g00315 542 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 510 IPR044974 GO:0006952
Phac10g00315 542 Gene3D - 341 424 IPR042197 -
Phac10g00315 542 Gene3D - 7 174 IPR035897 -
Phac10g00315 542 Gene3D - 175 339 IPR027417 -
Phac10g00315 542 PRINTS Disease resistance protein signature 283 297 - -
Phac10g00315 542 PRINTS Disease resistance protein signature 375 389 - -
Phac10g00315 542 PRINTS Disease resistance protein signature 208 223 - -
Phac10g00315 542 ProSiteProfiles TIR domain profile. 12 177 IPR000157 GO:0007165
Phac10g00315 542 SUPERFAMILY "Winged helix" DNA-binding domain 411 512 IPR036390 -
Phac10g00315 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 433 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00315 Phac-Chr10 4311873 4314043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00315 14 511 WRKY Transcription Factor Family AT4G12020 27.778 7.02e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00315 - - pvu:PHAVU_010G029000g 895.575