Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00179 ATGGAATTCGCCTCTTCAACATCAAAACTCCCAACGATGTACGATGTGGTGATAAACTTCAATGGAGAAGACATCGAAAGGAAATTTGTTTCTCATCTCGATTCTGCCCTCTCTGCTGTTGGCCTCACCACCTTCCTTCATCACCAGAATGCACAGAACCCAATTCACATCCAACAACCTATTCTCAATCTCTATCGTGTAGCAATTCTTGTTTTCACCAAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATCAAATGGCACCAAACTTATTGCCGACATGTTCTTCCCGTTTATTACGAAATTCACCCATCTGATGTACGGCTTCAGATGGGTGATTTTGGTAAAGCCTTCAAAGCAACTGCAGAGCAAGAATTCTCAGGACAAGAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTATTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTCGACAAAATTGTTAAGACCGTTCTTCATTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCGTGTGGAAGATGTGATTCGAACTATAAAAGATAAATCCACGGAAGTTTACACGATAGGGATAAGTGGAGCGGGAGGATCTGGGAAAACCACCCTGGCCAAAGCAATCTACAATCAACTTAGTGCTACATTCACAGAGGGAAGTTTCATTGAAGATATTGGACAAGTTAGTGGAACAAGAGCGGATCTTCGTTTAGAGAAACAACTTCTTTTAGATGTCCTAAAAACAAAGGTGGAGATACCTAGCGGTGAGATGGGGAGAAGAATGATTCAGGACAGACTTTCTGGGAAAAGGGTGCTCATTGTGCTTGACGATATGCCTGAGTCTGGTGCATCATTAGTATGGAAATGGCGTGAATGGTTCAGTGGAGGAACTGTAATAATCATTACAACAAGAGATGTAGACCTACTAAGGATTCTTCGAGTTGATTCTTTTTTTCCGTTAAAGCCGATGAACGCAAACGAGTCCCTTGAGCTTCTTAGTTGGCATGCATTTGGAGAAGCAAAACCAAAAGAAGAATACAATTACCTAGCAAAAAGTGTAGTTAGTCACTGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGAAGTTGTTTATTTGAAAGGACAAAAGAAGAATGGAATAGTGTTTTGTTAAAATTAGAGAAAATTCCCCTGCACGACATTCAACGGAAATTGAAAATAAGCTTCGATGGTTTACGCAATGAAATGGAAAAAGATTTATTCCTTGATGTATGTTGTTGCTTCGTTGGTGAGGGCAGAGCTTATGTTACCAAGATCCTAAATGACTGTGGAGTAGATGCTGATACTGGAATAAGAGTTCTGATAGAACGTAGCCTCATAAAAGTTAAAAAGAACAACAAACTTGGAATGCATCCTTTGATACAAGAAATGGGAAGAGAAATTATTAGTGAAATTTCAGAAGAGGAATTTTGGGTGGAGAGGAAACTGCAGTTTGATGATGCAGTATATGTGTTGACAGATAATTCAGTAAGAACATTCTTTATATATGTTTTTTAA 1596 0.3991 MEFASSTSKLPTMYDVVINFNGEDIERKFVSHLDSALSAVGLTTFLHHQNAQNPIHIQQPILNLYRVAILVFTKTYSQSAWCLHQLQQIIKWHQTYCRHVLPVYYEIHPSDVRLQMGDFGKAFKATAEQEFSGQELEHGMSRWSHALTKAANLFGWDESNYRSDAELVDKIVKTVLHLPVLSATKFPVGLQSRVEDVIRTIKDKSTEVYTIGISGAGGSGKTTLAKAIYNQLSATFTEGSFIEDIGQVSGTRADLRLEKQLLLDVLKTKVEIPSGEMGRRMIQDRLSGKRVLIVLDDMPESGASLVWKWREWFSGGTVIIITTRDVDLLRILRVDSFFPLKPMNANESLELLSWHAFGEAKPKEEYNYLAKSVVSHCGGLPLALEVIGSCLFERTKEEWNSVLLKLEKIPLHDIQRKLKISFDGLRNEMEKDLFLDVCCCFVGEGRAYVTKILNDCGVDADTGIRVLIERSLIKVKKNNKLGMHPLIQEMGREIISEISEEEFWVERKLQFDDAVYVLTDNSVRTFFIYVF* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00179 531 Pfam NB-ARC domain 192 418 IPR002182 GO:0043531
Phac10g00179 531 SMART AAA_5 207 342 IPR003593 GO:0016887
Phac10g00179 531 Gene3D - 11 173 IPR035897 -
Phac10g00179 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 436 IPR027417 -
Phac10g00179 531 PRINTS Disease resistance protein signature 210 225 - -
Phac10g00179 531 PRINTS Disease resistance protein signature 285 299 - -
Phac10g00179 531 PRINTS Disease resistance protein signature 377 391 - -
Phac10g00179 531 Pfam TIR domain 14 181 IPR000157 GO:0007165
Phac10g00179 531 Gene3D - 343 426 IPR042197 -
Phac10g00179 531 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Phac10g00179 531 Gene3D - 174 335 IPR027417 -
Phac10g00179 531 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 500 IPR044974 GO:0006952
Phac10g00179 531 SUPERFAMILY "Winged helix" DNA-binding domain 413 506 IPR036390 -
Phac10g00179 531 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Phac10g00179 531 SMART till_3 13 153 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00179 Phac-Chr10 3187844 3191895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00179 188 496 WRKY Transcription Factor Family AT5G45050 33.758 3.81e-44 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00179 - - pvu:PHAVU_010G029000g 776.163