Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00055 ATGTCAAGTCCTCAGATGGGTCGTGTGGATTTGGAGCAAGGGAGTCACCAGCGTTCTATGAGTGGCAGTGACATGAGCATGTGCTCTTCTGATGCAGAGAATGGTTCCTGCTACTCCCGATTCTATTCAACAAATGGTGACCATTATGATGATTGCACCTTTGCATGCGTTTCTGATGCTGCTGATTCCAGAAGGGCTTCTTCTTTTACTGATTGTTCAGTGGAGCTGGAAATTGAAAGTGGGGTTCCTGAAATTATGGTGCATTTGGCCAAAGTGGAGAGGGATTGCAGGATTTGTCATCTTGGTTTGGATAGTGGAGTTCCCATTGAATTGGGGTGTTCTTGTAAGGATGATTTGGGTGCTGCTCACAAGAAATGTGCAGAGGCCTGGTTTAAGATTAAAGGGAACAGGTGA 414 0.4565 MSSPQMGRVDLEQGSHQRSMSGSDMSMCSSDAENGSCYSRFYSTNGDHYDDCTFACVSDAADSRRASSFTDCSVELEIESGVPEIMVHLAKVERDCRICHLGLDSGVPIELGCSCKDDLGAAHKKCAEAWFKIKGNR* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00055 137 MobiDBLite consensus disorder prediction 1 27 - -
Phac10g00055 137 ProSiteProfiles Zinc finger RING-CH-type profile. 88 137 IPR011016 GO:0008270
Phac10g00055 137 PANTHER ZINC FINGER, RING-CH-TYPE 13 137 - -
Phac10g00055 137 SUPERFAMILY RING/U-box 93 136 - -
Phac10g00055 137 Pfam RING-variant domain 96 134 IPR011016 GO:0008270
Phac10g00055 137 SMART ringv_2 95 137 IPR011016 GO:0008270
Phac10g00055 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 137 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00055 Phac-Chr10 1282559 1283501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00055 62 137 C3H Transcription Factor Family AT5G05830 64.198 1.96e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00055 - - pvu:PHAVU_010G005300g 263.848