Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00050 ATGGGTCCCCCTAATCCCTATGGTCCTTGGGCGGTGGAAGTGTTGTGTCACGATAGTGCACAGTTTCATCAAACACTCTTTTCGATCTTCCTTAACTCACCACAACACCAACACACCCCACTCTATCTCCCCAATCTCACGCTACAAATACCCTTCTTCATCCTTCCATTGCATTCACCACAACCCCATTTTCTAAGGACCCTCAAAGAAACAGTCTCACATTGGAAGAAGATGGAGGGTAAAGAAGAGGATGTGAGAGTTGGAGCCAACAGATATGGGGAGAGGCAACCCATAGGAACTTCTGCGCAGGTGCAAGATGCCAAAGACTACAGAGAGCCACCCTCTGCACCTCTCTTTGAGCCTGGAGAGTTGTCTTCGTGGTCTTTCTATAGGGCTGGCATAGCAGAGTTTGTGGCCACCTTCTTGTTCCTTTACATCACGGTCTTGACTGTGATGGGTGTGGCCAAATCCAAATCCAAGTGCTCCACTGTGGGGATCCAAGGCATTGCTTGGGCTTTTGGGGGAATGATCTTTGCTCTTGTTTACAGCACTGCTGGCATCTCAGGGGGTCATATTAACCCAGCAGTGACATTTGGGCTGTTCTTGGCACGCAAACTCTCTCTGACAAGAGCAATATTTTACATGATTATGCAGTGCTTGGGAGCTATCTGTGGGGCAGGTGTAGTTAAGGGCTTCCAGCCACACCTGTATGAGGGGCTTGGTGGTGGTGCCAATTCAGTCGCTGCGGGCTACACCAGAAGGGCTGGCCTCGGAGCAGAGATTGTTGGTACATTTGTGCTTGTTTACACTGTCTTCTCTGCAACTGATGCCAAGAGAAATGCTAGAGACTCCCATGTTCCAATATTGGCACCATTGCCTATTGGTTTTGCTGTCTTTTTGGTGCACTTGGCTACAATTCCTGTCACAGGAACTGGTATCAACCCTGCTAGAAGTCTAGGTGCAGCCCTTATATACAACAAGGACTATATTTGGGATGAACATTGGATTTTTTGGCTTGGGCCTTTCATTGGAGCAGCACTTGCAGCTTTGTACCATCAAGTAGTGATCAGGGCCATCCCCTTCTCATCCAAGTGA 1095 0.4858 MGPPNPYGPWAVEVLCHDSAQFHQTLFSIFLNSPQHQHTPLYLPNLTLQIPFFILPLHSPQPHFLRTLKETVSHWKKMEGKEEDVRVGANRYGERQPIGTSAQVQDAKDYREPPSAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSKSKCSTVGIQGIAWAFGGMIFALVYSTAGISGGHINPAVTFGLFLARKLSLTRAIFYMIMQCLGAICGAGVVKGFQPHLYEGLGGGANSVAAGYTRRAGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPVTGTGINPARSLGAALIYNKDYIWDEHWIFWLGPFIGAALAALYHQVVIRAIPFSSK* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00050 364 PRINTS Major intrinsic protein family signature 335 355 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac10g00050 364 PRINTS Major intrinsic protein family signature 259 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac10g00050 364 PRINTS Major intrinsic protein family signature 173 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac10g00050 364 PRINTS Major intrinsic protein family signature 295 317 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac10g00050 364 PRINTS Major intrinsic protein family signature 210 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac10g00050 364 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac10g00050 364 FunFam Probable aquaporin PIP1-2 116 364 - -
Phac10g00050 364 NCBIfam MIP family channel protein 135 352 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac10g00050 364 CDD MIP 131 355 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac10g00050 364 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 90 360 IPR034294 -
Phac10g00050 364 Pfam Major intrinsic protein 123 352 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac10g00050 364 Gene3D Glycerol uptake facilitator protein. 116 361 IPR023271 -
Phac10g00050 364 SUPERFAMILY Aquaporin-like 124 357 IPR023271 -
Phac10g00050 364 ProSitePatterns MIP family signature. 191 199 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00050 Phac-Chr10 1195053 1198476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00050 78 364 Major Intrinsic Protein MIP AT3G61430 84.669 1.23e-172 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00050 K09872 - gmx:100803259 540.036