Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00027 ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCTGTTTGCCAATACTCTTGCTTCTGATTATCCAAGGGAAAGTGATGGGACCTGCTTACAGATGCGATTGTCTTATAGTCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGACTGTCATTTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCGATTTATGAGAGAAAAGCCAGTCTGAAGGATTTCTATGGTGTGATCTTTCCCTCTTTACTTCAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAGAAACATTTATGTGCTACAAAGTACATGCCCAAAGATATAAGAAAAGGAAAACTATCTGAAATGGATATTGAGAGAGAAGAAGAATGCGGTATTTGCATGGAGATGAACAACAAGGTTGTCTTGCCCAATTGCAACCACACGTTGTGTATAAAATGCTACAGGAAATGGCATTCCAGATCTCAATCTTGCCCTTTCTGTCGGGACAGTCTTCAAAGAGTAAATTCGGGTGACCTTTGGATCTACTTGAACAGCAATGAGATAAATGACTTGGCTTCAATCAACAAGGAGAATCTAAAAAGACTATTTACGTATGTTGACAAGTTGCCTCTGATTTTGTCAGATCCTTCACTTATGTCTTATCCTCAACGCTAA 720 0.4 MRKSFKDSLKALEADILFANTLASDYPRESDGTCLQMRLSYSPAAQFFLFLVQWTDCHFAGALGLLRVLIYKVYEDGKTTMSIYERKASLKDFYGVIFPSLLQLHRGITDVEERKQKHLCATKYMPKDIRKGKLSEMDIEREEECGICMEMNNKVVLPNCNHTLCIKCYRKWHSRSQSCPFCRDSLQRVNSGDLWIYLNSNEINDLASINKENLKRLFTYVDKLPLILSDPSLMSYPQR* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00027 239 ProSiteProfiles Zinc finger RING-type profile. 145 183 IPR001841 -
Phac10g00027 239 Pfam Zinc finger, C3HC4 type (RING finger) 142 189 - -
Phac10g00027 239 FunFam RING/U-box superfamily protein 127 192 - -
Phac10g00027 239 SUPERFAMILY RING/U-box 125 188 - -
Phac10g00027 239 PANTHER RING FINGER PROTEIN 41, 151 3 234 - -
Phac10g00027 239 SMART ring_2 145 182 IPR001841 -
Phac10g00027 239 ProSitePatterns Zinc finger RING-type signature. 160 169 IPR017907 -
Phac10g00027 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 215 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00027 Phac-Chr10 629839 634167 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00027 94 183 C3H Transcription Factor Family AT5G01960 32.292 4.29e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00027 K25840 - gmx:100819267 397.897