Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac10g00027 | ATGCGAAAGTCCTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGACATTCTGTTTGCCAATACTCTTGCTTCTGATTATCCAAGGGAAAGTGATGGGACCTGCTTACAGATGCGATTGTCTTATAGTCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGACTGTCATTTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCGATTTATGAGAGAAAAGCCAGTCTGAAGGATTTCTATGGTGTGATCTTTCCCTCTTTACTTCAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAGAAACATTTATGTGCTACAAAGTACATGCCCAAAGATATAAGAAAAGGAAAACTATCTGAAATGGATATTGAGAGAGAAGAAGAATGCGGTATTTGCATGGAGATGAACAACAAGGTTGTCTTGCCCAATTGCAACCACACGTTGTGTATAAAATGCTACAGGAAATGGCATTCCAGATCTCAATCTTGCCCTTTCTGTCGGGACAGTCTTCAAAGAGTAAATTCGGGTGACCTTTGGATCTACTTGAACAGCAATGAGATAAATGACTTGGCTTCAATCAACAAGGAGAATCTAAAAAGACTATTTACGTATGTTGACAAGTTGCCTCTGATTTTGTCAGATCCTTCACTTATGTCTTATCCTCAACGCTAA | 720 | 0.4 | MRKSFKDSLKALEADILFANTLASDYPRESDGTCLQMRLSYSPAAQFFLFLVQWTDCHFAGALGLLRVLIYKVYEDGKTTMSIYERKASLKDFYGVIFPSLLQLHRGITDVEERKQKHLCATKYMPKDIRKGKLSEMDIEREEECGICMEMNNKVVLPNCNHTLCIKCYRKWHSRSQSCPFCRDSLQRVNSGDLWIYLNSNEINDLASINKENLKRLFTYVDKLPLILSDPSLMSYPQR* | 240 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac10g00027 | 239 | ProSiteProfiles | Zinc finger RING-type profile. | 145 | 183 | IPR001841 | - | |
Phac10g00027 | 239 | Pfam | Zinc finger, C3HC4 type (RING finger) | 142 | 189 | - | - | |
Phac10g00027 | 239 | FunFam | RING/U-box superfamily protein | 127 | 192 | - | - | |
Phac10g00027 | 239 | SUPERFAMILY | RING/U-box | 125 | 188 | - | - | |
Phac10g00027 | 239 | PANTHER | RING FINGER PROTEIN 41, 151 | 3 | 234 | - | - | |
Phac10g00027 | 239 | SMART | ring_2 | 145 | 182 | IPR001841 | - | |
Phac10g00027 | 239 | ProSitePatterns | Zinc finger RING-type signature. | 160 | 169 | IPR017907 | - | |
Phac10g00027 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 215 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac10g00027 | Phac-Chr10 | 629839 | 634167 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac10g00027 | 94 | 183 | C3H Transcription Factor Family | AT5G01960 | 32.292 | 4.29e-08 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac10g00027 | K25840 | - | gmx:100819267 | 397.897 |