Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00025 ATGAATTGGGTGTTGGATGTTAATGTTCTCTTTTCAATAATACTTTTTTTTCTTAGAAAATATATTTTTTCCGTATTTGGTTTTAACCAATTCATTATGCAAACCTTGTTTCTGCACAGTGCTTCTGATTATCCAAGGGAAAGTGATGGGACCTGCTTACAGATGCGATTGTCTTATAGTCCAGCTGCTCAATTTTTCCTTTTTCTGGTTCAGTGGACTGACTGTCATTTTGCTGGAGCCTTGGGATTGCTTAGAGTTCTCATATACAAGGTATATGAGGATGGGAAGACAACCATGTCGATTTATGAGAGAAAAGCCAGTCTGAAGGATTTCTATGGTGTGATCTTTCCCTCTTTACTTCAACTCCACAGAGGAATCACTGATGTAGAAGAAAGAAAACAGAAACATTTATGTGCTACAAAGTACATGCCCAAAGATATAAGAAAAGGAAAACTATCTGAAATGGATATTGAGAGAGAAGAAGAATGCGGTATTTGCATGGAGATGAACAACAAGGTTGTCTTGCCCAATTGCAACCACACGTTGTGTATAAAATGCTACAGGAAATGGCATTCCAGATCTCAATCTTGCCCTTTCTGTCGGGACAGTCTTCAAAGAGTAAATTCGGGTGACCTTTGGATCTACTTGAACAGCAATGAGATAAATGACTTGGCTTCAATCAACAAGGAGAATCTAAAAAGACTATTTACGTATGTTGACAAGTTGCCTCTGATTTTGTCAGATCCTTCACTTATGTCTTATCCTCAACGCTAA 774 0.3786 MNWVLDVNVLFSIILFFLRKYIFSVFGFNQFIMQTLFLHSASDYPRESDGTCLQMRLSYSPAAQFFLFLVQWTDCHFAGALGLLRVLIYKVYEDGKTTMSIYERKASLKDFYGVIFPSLLQLHRGITDVEERKQKHLCATKYMPKDIRKGKLSEMDIEREEECGICMEMNNKVVLPNCNHTLCIKCYRKWHSRSQSCPFCRDSLQRVNSGDLWIYLNSNEINDLASINKENLKRLFTYVDKLPLILSDPSLMSYPQR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00025 257 FunFam RING/U-box superfamily protein 145 210 - -
Phac10g00025 257 ProSitePatterns Zinc finger RING-type signature. 178 187 IPR017907 -
Phac10g00025 257 SUPERFAMILY RING/U-box 143 206 - -
Phac10g00025 257 PANTHER RING FINGER PROTEIN 41, 151 33 252 - -
Phac10g00025 257 SMART ring_2 163 200 IPR001841 -
Phac10g00025 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 233 IPR013083 -
Phac10g00025 257 Pfam Zinc finger, C3HC4 type (RING finger) 160 207 - -
Phac10g00025 257 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00025 Phac-Chr10 629839 632375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00025 112 201 C3H Transcription Factor Family AT5G01960 32.292 7.59e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00025 K25840 - gmx:100819267 397.512