Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00013 ATGGCTTCAACTCCCCGCACCGTCGAAGAGATCTTCAAGGATTACACCGCTCGGAGAACCGCCATCGTTCGCGCTCTCTCTCAAGATGTCGATGAATTCTACGGACTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCAAATGAGACTTGGGAGGTGACTTTGCCAGCGGAGGAGGTTCCGCCCGAGCTTCCGGAGCCTGCGCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGCTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTGGCTTGATAAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCAGTAAAGGACAAGCCCACTGCAGACAGTGGAAGCAAATCTAGGGGCAGCACCAAGGTTAGTGTTGGTAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCAGATGAAGGTTTTGCAGAGGAGGATGACGAGCATAGTGAAACCCTGTGTGGGAGCTGTGGCGGAAATTACAATGCAGATGAATTTTGGATTGGTTGTGACATATGTGAGAGGTGGTTCCATGGTAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGGGGAAGGCCCTAA 726 0.4862 MASTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFGLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKVSVGRSSDGQVKSNPKFADEGFAEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00013 241 SUPERFAMILY FYVE/PHD zinc finger 178 239 IPR011011 -
Phac10g00013 241 SMART PHD_3 187 235 IPR001965 -
Phac10g00013 241 Pfam PHD-finger 188 235 IPR019787 -
Phac10g00013 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Phac10g00013 241 FunFam PHD finger alfin-like protein 180 236 - -
Phac10g00013 241 CDD PHD_AL_plant 187 237 IPR044104 -
Phac10g00013 241 MobiDBLite consensus disorder prediction 146 167 - -
Phac10g00013 241 PANTHER CPG BINDING PROTEIN 4 240 IPR045104 GO:0006355|GO:0042393
Phac10g00013 241 MobiDBLite consensus disorder prediction 135 170 - -
Phac10g00013 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Phac10g00013 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
Phac10g00013 241 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00013 Phac-Chr10 432600 435981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00013 2 240 Alfin-like Transcription Factor Family AT5G05610 75.417 5.87e-119 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phac10g00013 Alfin 2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00013 K26274 - gmx:100793126 469.544