Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac10g00012 ATGGCTTCAACTCCCCGCACCGTCGAAGAGATCTTCAAGGATTACACCGCTCGGAGAACCGCCATCGTTCGCGCTCTCTCTCAAGATGTCGATGAATTCTACGGACTCTGTGATCCAGATAAGGAGAACTTGTGCCTCTATGGACATCCAAATGAGACTTGGGAGGTGACTTTGCCAGCGGAGGAGGTTCCGCCCGAGCTTCCGGAGCCTGCGCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGCTGCTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTGGCTTGATAAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCAGTAAAGGACAAGCCCACTGCAGACAGTGGAAGCAAATCTAGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCAGATGAAGGTTTTGCAGAGGAGGATGACGAGCATAGTGAAACCCTGTGTGGGAGCTGTGGCGGAAATTACAATGCAGATGAATTTTGGATTGGTTGTGACATATGTGAGAGGTGGTTCCATGGTAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGGGGAAGGCCCTAA 714 0.4874 MASTPRTVEEIFKDYTARRTAIVRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFGLINDLPTVFEVVTERKPVKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGFAEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac10g00012 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 231 IPR013083 -
Phac10g00012 237 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Phac10g00012 237 CDD PHD_AL_plant 183 233 IPR044104 -
Phac10g00012 237 SUPERFAMILY FYVE/PHD zinc finger 174 235 IPR011011 -
Phac10g00012 237 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Phac10g00012 237 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Phac10g00012 237 Pfam PHD-finger 184 231 IPR019787 -
Phac10g00012 237 MobiDBLite consensus disorder prediction 146 163 - -
Phac10g00012 237 PANTHER CPG BINDING PROTEIN 4 236 IPR045104 GO:0006355|GO:0042393
Phac10g00012 237 SMART PHD_3 183 231 IPR001965 -
Phac10g00012 237 MobiDBLite consensus disorder prediction 135 166 - -
Phac10g00012 237 FunFam PHD finger alfin-like protein 176 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac10g00012 Phac-Chr10 432600 435981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac10g00012 2 236 Alfin-like Transcription Factor Family AT5G05610 76.695 3.72e-121 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phac10g00012 Alfin 1.9e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac10g00012 K26274 - gmx:100793126 469.544