Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9991g00002 TGTAAAGAGAAGCAAGTTATGCACAATTTTCTGACTTGGATTAAGAACCACATTGTGACTTGTTTGGATTTTGAAAGGGAAAATCTCAATTCCGCGAATGTTGAAGTTGAAAGACACAGGTTGCCGAGCTTGAACAACTCGTCATCAATGGCGGCGAGGGCAAAAGAGGCAGAGAAAATAAATGAGCGTGCTGCAGTGGCTAACCCAGAGGAGGTGGTTTCTATGGTTGAGATGAGCATCCAGAACAGCACAGAGAGAAGGAGGCTGGGGTTTTTCTCTTGTGGAACTGGCAACCCCATTGATGATTGCTGGCGTTGTGACCCGAACTGGCAACGCAACAGGAAGCGTCTTGCGGATTGTGGCATTGGCTTTGGTAGAAATGCCATTGGTGGCCGTGATGGCAAGTTCTATGTGGTGACTGACCCCAGAGATGATGACCCTGTGAACCCAAAACCCGGCACTCTTCGCCATGCTGTGATCCAGGACAGACCCCTCTGGATTGTGTTCAAGAGGGACATGGTTATTCAGTTGAAGCAAGAGCTGATCATGAACAGCTTCAAGACCATTGATGCAAGAGGAGTGAATGTGCACATTGCTAATGGGGCATGCATCACAATCCAGTTTGTTACCAATGTCATCATCCATGGCCTGCACATTCATGACTGCAAACCCACTGGGAATGCCATGGTGAGAAGCTCCCCCACTCACTTTGGGTGGAGGACAATGGCTGATGGTGATGCCATCTCCATATTTGGCTCAAGCCACATTTGGGTTGACCACAACTCCTTGTCCCACTGTGCTGATGGCCTTGTGGATGCTGTCATGGGCTCAACAGCCATAACAATTTCCAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCCTACACAAGAGACAAGCAAATGCAAGTTACCATCGCATACAACCATTTCGGAGAGGGACTTATCCAGAGAATGCCACGGTGTAGACATGGATATTTCCACGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAACCGATACAATGCTCCTGTTAACCCTTTTGCCAAGGAGGTGACTAAGAGAGTGGAAACAGCAGAAACCCAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATTTGTTGCTGAATGGTGCCTATTTCACCCCATCAGGAGCTGGAGCATCAGCCAGCTATGCCAGGGCCTCTAGCTTAGGAGCAAAGTCTTCTTCCATGGTTGGTTCCATGACTTCCAATGCTGGTGCACTGGGTTGCAAAAGAGGCCGTCAGTGCTAG 1341 0.4922 CKEKQVMHNFLTWIKNHIVTCLDFERENLNSANVEVERHRLPSLNNSSSMAARAKEAEKINERAAVANPEEVVSMVEMSIQNSTERRRLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNPFAKEVTKRVETAETQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGRQC 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9991g00002 446 PANTHER PECTATE LYASE 18-RELATED 63 444 IPR045032 GO:0030570
Mupr9991g00002 446 SMART amb_all 172 369 IPR002022 -
Mupr9991g00002 446 Gene3D - 97 439 IPR012334 -
Mupr9991g00002 446 SUPERFAMILY Pectin lyase-like 72 440 IPR011050 -
Mupr9991g00002 446 FunFam Pectate lyase 97 439 - -
Mupr9991g00002 446 Pfam Pectate lyase 184 361 IPR002022 -
Mupr9991g00002 446 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Mupr9991g00002 446 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Mupr9991g00002 446 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Mupr9991g00002 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
Mupr9991g00002 446 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Mupr9991g00002 446 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Mupr9991g00002 446 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Mupr9991g00002 446 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9991g00002 Mupr-Chr9991 13471 18514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9991g00002 46 446 Polysaccharide Lyase AT4G13710 82.512 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9991g00002 K01728 - gmx:100781845 827.78