Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9978g00004 ATGGCTTTATCCCTATCAATCCACTGCTCTCCCACCGTTAATCCTCTCCGACGGTCCCCAAAACCCTCTTTATCTACGCACCGCCGCGTCAACCACCGCGTTTGCGTGGCGAGCGGTGGCAGTCCTCTACTCGAAGTGAATGACCTGAGGGCTAAGATAGTGGAATCCAACGTGGAGATTCTCCACGGCGTTAACCTTACCGTCAACCAAGGAGAGGTTCACGCCATCATGGGTAAAAATGGTTCTGGCAAAAGCACTTTCGCCAAGGTTCTTGTGGGGCACCCGGATTATGAAGTAACCGGAGGTAGAGTTGTGTTCAAAGGGGAAAATCTGCTTGAGATGGAACCTGAAGAAAGGTCTCTTGCGGGTCTCTTTATGAGTTTCCAATCCCCTGTTGAAATCCCCGGTGTTTCCAATGATCAGTTTCTCGTTATGGCCTACAATGCTCGAAGAAAAAAGCTTGGTCTACCTGAACTTGGCCCGCTTGAGTGTTTTTCTTACCTGATGGAGAAACTTCAGCTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTGAACGAAGGGTTTAGTGGGGGTGAGCGCAAGCGCAATGAAATCTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCTATTTTGGATGAAATTGATTCTGGGTTGGATGTTGATGCGCTCAGGGATGTTGCTAATGCAGTTAATCGGATTCTCACCCCAGACAATTCTTTGTTGATGATAACTCATTATCGACGGATTTTGGATCTCTTGAATCCTACGCATGTCCATGTTATGGACAAAGGGAAAATTGCAAGGACAGGCGACATATTGATGGTAGAAGCTATTGAGGCTGAGGGATATGAAACAGTCTCCACTTTAACATAA 879 0.471 MALSLSIHCSPTVNPLRRSPKPSLSTHRRVNHRVCVASGGSPLLEVNDLRAKIVESNVEILHGVNLTVNQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGRVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSNDQFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNRILTPDNSLLMITHYRRILDLLNPTHVHVMDKGKIARTGDILMVEAIEAEGYETVSTLT 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9978g00004 292 Gene3D - 43 291 IPR027417 -
Mupr9978g00004 292 Pfam ABC transporter 61 215 IPR003439 GO:0005524
Mupr9978g00004 292 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524|GO:0016887
Mupr9978g00004 292 SMART AAA_5 70 267 IPR003593 GO:0016887
Mupr9978g00004 292 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 37 289 IPR010230 GO:0005524
Mupr9978g00004 292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 44 290 IPR003439 GO:0005524
Mupr9978g00004 292 CDD ABC_FeS_Assembly 44 285 IPR010230 GO:0005524
Mupr9978g00004 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 273 IPR027417 -
Mupr9978g00004 292 NCBIfam Fe-S cluster assembly ATPase SufC 44 287 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9978g00004 Mupr-Chr9978 23735 26183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9978g00004 57 272 Calmodulin-binding Proteins AT2G36910 23.581 1.84e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9978g00004 K09013 - gmx:100811883 513.072