Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9960g00005 ATGGCGCATAGGTTGCTAAGAGACCACGAAGCCGACGGTTGGGAGCGTTCCGATTTTCCCATCATCTGCGAATCCTGCCTCGGCGACAGCCCCTACGTTCGAATGACAAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTTTTTAGATGGAGACCTGGTCGAGATGCCAGATATAAGAAAACTGAGATCTGTCAGACATGTAGTAAATTAAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTTCGAGACACAGCTCTCAATATCGATTCCAATGATGCCATTCCAAAGAGTGATGTCAATAGGGAGTATTTTGCTGAAGAGCACGACCGCAGGGCTAGAGCTGGTATAGATTATGAATCCTCTTACGGTAAAGTACGCCCAAATGATACTATCATGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGCGAATGTACCAGAGGAGCTGAGTGCCCCTATAGACATGAGATGCCAGTAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAAATGACCACTCTGGATGCTCCTGAGGATGAGAACATTAAAACTCTTTATGTCGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTACGGGATCACTTTTATGCCCATGGAGAAATCGAATCCATCAAAATGGTTCTCCAACGAGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAGAAGGCAGCAGAAGAACTCTCCAACAAATTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGACCCCAGACTTCAAAACCCGAGTCAGATGGCTCTGATCAAGCAAGGCCGCAGGCATCTGTGGCTCATAGCGGATTGTTGCCTCGGGCAGTTATATCACAGCAGCAGAACCAAGACCAAACACAAGGAATGCTTTACTATAACAATCCACCACCTCTTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTTCCAACCCAAGACGGTCCTCCTGGTGGGCCTTCAGGGTCAGGGGAGAACAAGCCCAGTTTGGAGAAGCAGCAAATGCAACATTATGCCCATCCTATGATGCCTCCTCCACCTGGTCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCAATCAGCTCCCCCATATCATCAGTACCCACCGCCACCTCCATACAATGCTGCAGTGGCTCCATCCCAGCCACCAGCTCCAAATCATCCTTATCAGCACTCAATGCAGCAAGGGTCTTCACAGACAGGGTCTGGACAGGCTGCATCTGCCTCAGCTGAAACTGGAACATCAACATCAGGGTCACAGCAG 1455 0.4701 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALNIDSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLDAPEDENIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARPQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPLQQERSYYPSMDPQRMGALVPTQDGPPGGPSGSGENKPSLEKQQMQHYAHPMMPPPPGQYHHQYYPPYGYMQSAPPYHQYPPPPPYNAAVAPSQPPAPNHPYQHSMQQGSSQTGSGQAASASAETGTSTSGSQQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9960g00005 485 MobiDBLite consensus disorder prediction 427 485 - -
Mupr9960g00005 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Mupr9960g00005 485 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Mupr9960g00005 485 Gene3D - 212 310 IPR012677 -
Mupr9960g00005 485 MobiDBLite consensus disorder prediction 299 320 - -
Mupr9960g00005 485 MobiDBLite consensus disorder prediction 334 411 - -
Mupr9960g00005 485 SMART rrm1_1 229 297 IPR000504 GO:0003723
Mupr9960g00005 485 MobiDBLite consensus disorder prediction 427 450 - -
Mupr9960g00005 485 MobiDBLite consensus disorder prediction 304 318 - -
Mupr9960g00005 485 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 376 IPR039171 GO:0003723
Mupr9960g00005 485 Pfam Torus domain 145 194 IPR032297 -
Mupr9960g00005 485 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Mupr9960g00005 485 SUPERFAMILY RNA-binding domain, RBD 222 309 IPR035979 GO:0003676
Mupr9960g00005 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Mupr9960g00005 485 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Mupr9960g00005 485 MobiDBLite consensus disorder prediction 451 485 - -
Mupr9960g00005 485 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Mupr9960g00005 485 CDD RRM_RBM22 227 300 - -
Mupr9960g00005 485 MobiDBLite consensus disorder prediction 334 360 - -
Mupr9960g00005 485 Gene3D - 148 210 - -
Mupr9960g00005 485 SMART c3hfinal6 157 183 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9960g00005 Mupr-Chr9960 7711 11876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9960g00005 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 32.500 1.33e-06 48.9