Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9937g00001 ATGGTCATCGACAACTCTGACGATGACATGGTCAATCCTAAGCCAAGACCTCTCCGTTTTGTCATCGTCCAACAAGGCCCATTGTGGATTATATTCAAGCGCAACATGATCATTAAGTTGAGGCAGGAGCTCTTGATTTCCTCCAACAAGACCATTGAGGATCGTGGTGCGAATGTGCAAATCAAGAATGATGGTGACCTCACCATGCAATACGTGAACAATGTCATTATTCATGAAATTTGCATCAATAAAATCGTACCCAAAGATGGTGGCATGATTAGGGACTCCTACACCCACTTTGGATTGAGGATAAAGAGCAACGAGGATGCCCTTTCCATATTTGGAACCTCCAATATTTGGATAGATCATGTTTTCCTCTTTGACTCTACCAACGGTCTTATCGATGACCAAATACCACCACCAAGCAATAATGAGCTAAGATCCAAAGTTACTCATCTTTAA 462 0.4199 MVIDNSDDDMVNPKPRPLRFVIVQQGPLWIIFKRNMIIKLRQELLISSNKTIEDRGANVQIKNDGDLTMQYVNNVIIHEICINKIVPKDGGMIRDSYTHFGLRIKSNEDALSIFGTSNIWIDHVFLFDSTNGLIDDQIPPPSNNELRSKVTHL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9937g00001 153 PRINTS Pollen allergen Amb family signature 7 32 IPR018082 -
Mupr9937g00001 153 PRINTS Pollen allergen Amb family signature 43 59 IPR018082 -
Mupr9937g00001 153 PRINTS Pollen allergen Amb family signature 107 128 IPR018082 -
Mupr9937g00001 153 Pfam Pectate lyase 41 130 IPR002022 -
Mupr9937g00001 153 SMART amb_all 35 153 IPR002022 -
Mupr9937g00001 153 SUPERFAMILY Pectin lyase-like 8 138 IPR011050 -
Mupr9937g00001 153 Gene3D - 1 137 IPR012334 -
Mupr9937g00001 153 PANTHER PECTATE LYASE 18-RELATED 2 135 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9937g00001 Mupr-Chr9937 7319 7854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9937g00001 1 135 Polysaccharide Lyase AT1G14420 57.037 4.02e-50 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9937g00001 K01728 - gmx:100785801 185.267