Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr992g00002 ATGAGAGCGAGTGGGAAGGTTAAGTGGTTTAGTGATCAGAAGGGGTTTGGATTCATAACCCCTGATGATGGCGGCGAAGACATCTTCGTTCACCAATCTCAAATACGAACCGATGGCTTTCGTAGCCTCGCTGAAGGAGAGTCCGTTGAGTTTGCCGTTGAGTCCGACGCCGATGGACGCGCTAAGGCCGTTCAAGTCACCGGCCCCGACGGCGCTAGCGTCCAGGGGACCCGACGCGGCGGTGAAGGCAGTCGTGGCTCTGGCTACGGTGGACGTGGCGGTGGAGGCTCTGGCTACGGTGGTGGTGGTGGTGGTGGCGGTAGAGGAGGTGGCGGTGGATGTTATAGTTGCGGCGAGTCGGGCCATTTGGCTAGGGATTGCTACCAAGGAAGCGGTGGCGGTGGTGGAGGCGGGAGGTACGGCAGTGGTGGAGGTGGAAGGTATGGTGGAGGAGGAGGTGGCGGCGGCGGCGGTGGTGGTGGTGGAGGCGGAGGCTGCTATAACTGTGGAGAATCTGGGCATTTTGCAAGAGATTGTCCTTCTAGTGCTCGGAAGTTAAAAAGAAGTCTAAACTAG 576 0.5885 MRASGKVKWFSDQKGFGFITPDDGGEDIFVHQSQIRTDGFRSLAEGESVEFAVESDADGRAKAVQVTGPDGASVQGTRRGGEGSRGSGYGGRGGGGSGYGGGGGGGGRGGGGGCYSCGESGHLARDCYQGSGGGGGGGRYGSGGGGRYGGGGGGGGGGGGGGGGGCYNCGESGHFARDCPSSARKLKRSLN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr992g00002 191 ProSitePatterns Cold-shock (CSD) domain signature. 16 35 IPR019844 -
Mupr992g00002 191 SMART csp_8 4 69 IPR011129 GO:0003676
Mupr992g00002 191 Gene3D - 162 189 - -
Mupr992g00002 191 PANTHER COLD SHOCK DOMAIN PROTEIN 2 2 182 - -
Mupr992g00002 191 SUPERFAMILY Retrovirus zinc finger-like domains 95 131 IPR036875 GO:0003676|GO:0008270
Mupr992g00002 191 SUPERFAMILY Nucleic acid-binding proteins 2 68 IPR012340 -
Mupr992g00002 191 CDD CSP_CDS 5 68 IPR002059 GO:0003676
Mupr992g00002 191 ProSiteProfiles Zinc finger CCHC-type profile. 166 181 IPR001878 GO:0003676|GO:0008270
Mupr992g00002 191 Gene3D - 1 80 IPR012340 -
Mupr992g00002 191 MobiDBLite consensus disorder prediction 57 94 - -
Mupr992g00002 191 SUPERFAMILY Retrovirus zinc finger-like domains 149 186 IPR036875 GO:0003676|GO:0008270
Mupr992g00002 191 Pfam Zinc knuckle 113 127 IPR001878 GO:0003676|GO:0008270
Mupr992g00002 191 Pfam Zinc knuckle 165 181 IPR001878 GO:0003676|GO:0008270
Mupr992g00002 191 ProSiteProfiles Zinc finger CCHC-type profile. 114 127 IPR001878 GO:0003676|GO:0008270
Mupr992g00002 191 Gene3D - 103 131 - -
Mupr992g00002 191 SMART c2hcfinal6 113 129 IPR001878 GO:0003676|GO:0008270
Mupr992g00002 191 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Mupr992g00002 191 Pfam 'Cold-shock' DNA-binding domain 4 68 IPR002059 GO:0003676
Mupr992g00002 191 PRINTS Cold shock protein signature 5 20 IPR002059 GO:0003676
Mupr992g00002 191 PRINTS Cold shock protein signature 26 35 IPR002059 GO:0003676
Mupr992g00002 191 PRINTS Cold shock protein signature 41 59 IPR002059 GO:0003676
Mupr992g00002 191 ProSiteProfiles Cold-shock (CSD) domain profile. 2 68 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr992g00002 Mupr-Chr992 14646 15830 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mupr992g00002 CSD 2.9e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr992g00002 - - gmx:100799708 180.644