Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr990g00002 ATGAATGATTTTCTATCTGCAATGATGGTTTCCCCAGGCTTGTTACCATCAGGGTCTTTGCTAGATTCTCTGATTCATGTATCCAAAGAAGTTGGCTCAATGGAGAAGTTTCCATTGGTACACACAAGGAACGTTTCATCAATGATAAGGAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACGGATATTCCACTTCCTCCCTCTTCAATCCTGTGTCTCACAGAACTCTTCTCTGTGATAAGAAGAGTACAAGTTTTGATCCAAGACTGCAAGGATGGAAGCACTCTTTGGAGTCTCATACAGTTAGAGTTCATTTCCAACCAATTTTATGTGCTTGTTAAGGAGATGGGAAGGGCCCTTGATATCCTTCCTTTGAGGTTGCTTAATGTAACATCAGATATAAGGGAACAAGTGGAGCTTCTTCACAAGCAAGCAAAGAGGGCTGAGTTACTAATTGATCCTAGAGAGCTTCAAAGAAGAGAACAGCTTATACAAGTAATGGCCAACAACAATTTACAAAACAAGAAGAACAAGGGGTTTATTGACTTTGGCAAAGTGGAAGAGATATTAAGCAGCATTGGTTTGAGAACCCCATTAGATTATGATGGAGAAATATCCAAGTTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTAATCGTTGTCTCAAACATAAACAATCTCATATCTCTGGTCTCTTATTCCAAGTCCATGATATTCAGAGATGGTGAGAGTGATAGAAATGAAGAAGATTGTAAGCCACTATCTGCATTTTTAAATAACAAAGTCCATGATAGTTCTTCAACTTCATCCTCTAATGTTCCTGATGAATTTCGTTGCCCAATTTCACTTGACTTAATGAGAGACCCCGTGATTGTGTCATCAGGGCACAGTTACGATAGAACCTCAATTGCACAATGGATAAACTCTGGCCATCACACATGCCCCAAAAGTGGGCAAAGGCTAATTCACACTGCTCTAATACCCAATTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCTATGATAACAATGTCCCAGTAAATGATCCTACAACCGAGGGAAACAACAAGAACAAGAACTCGAACGAGGAAGCTATTGACCATATTTCTGTAAAGAAAGCAGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTGGCAACCGGTTCTGCTGATATCCAAAGGCAAGCAGCATATGAACTTCGGTTACTTGCGAAAACCGGCATGGACAACCGAAGAGTCATAGCTGAGGTAGGGGCTATTCCCTTCCTTGTAACACTTCTAGGATCTCAAGATTCAAGAATACAAGAGCATGCAGTGACAGCCTTGTTCAACCTCTCAATTTTCGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGACAGCATAGTACAAGTACTTGAATCAGGGAAGACCATGGAAGCAAGGGAGAATGCAGCAGCAGCAATATTTAGCTTGTCTATGGTGGATGAGTGCAAAATGCAAATTGGAGGAAGGCCAAGGGCAATACCTGCCTTAGTTGGACTCTTGAAAGAAGGCACTCCAATAGGGAAAAGAGATGCAGTAACTGCACTGTTCAATCTTGCAGTTTACAATCCTAACAAGGGAAATGTTGTCAAAGCTGGTGCAGTTCCTGTGCTTGTTGAGTTGCTGATGGATGACAAGGCTGGCATAACAGATGATGCACTTGCTGTGCTTGCTTTGCTCCTTGGATGCTCTGAGGGGCTAGAAGAGATAAGGAATAGTAGAGCATTGGTGCCACTTCTCATTGATCTTATGAGATTTGGTTCAGTGAAAGGGAAGGAAAATTCAATAACACTTTTGCTAGGACTGTGCAAAGAAGAGGGGGAAGTGGTGGCAAGGAGGCTCTTGGCAAATCCAAGGAGCATTCCTTCTCTTCAAAGCTTGGCTGCTGATGGTTCCTTGAGAGCCAGGAGAAAGGCTGATGCACTGCTTAGGTTCCTCAATAGTTGGTGGTTTGGTAAACCAATTCAACCTGTCTACCTACCTACCTCGCATTAG 2061 0.4236 MNDFLSAMMVSPGLLPSGSLLDSLIHVSKEVGSMEKFPLVHTRNVSSMIRRIKLLSSLFEEIQETDIPLPPSSILCLTELFSVIRRVQVLIQDCKDGSTLWSLIQLEFISNQFYVLVKEMGRALDILPLRLLNVTSDIREQVELLHKQAKRAELLIDPRELQRREQLIQVMANNNLQNKKNKGFIDFGKVEEILSSIGLRTPLDYDGEISKLEAEAQNQAGTGGLIVVSNINNLISLVSYSKSMIFRDGESDRNEEDCKPLSAFLNNKVHDSSSTSSSNVPDEFRCPISLDLMRDPVIVSSGHSYDRTSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYDNNVPVNDPTTEGNNKNKNSNEEAIDHISVKKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMDNRRVIAEVGAIPFLVTLLGSQDSRIQEHAVTALFNLSIFDNNKILIMAAGAVDSIVQVLESGKTMEARENAAAAIFSLSMVDECKMQIGGRPRAIPALVGLLKEGTPIGKRDAVTALFNLAVYNPNKGNVVKAGAVPVLVELLMDDKAGITDDALAVLALLLGCSEGLEEIRNSRALVPLLIDLMRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRFLNSWWFGKPIQPVYLPTSH 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr990g00002 686 Pfam U-box domain 280 350 IPR003613 GO:0004842|GO:0016567
Mupr990g00002 686 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Mupr990g00002 686 Gene3D - 512 670 IPR011989 -
Mupr990g00002 686 Gene3D - 367 511 IPR011989 -
Mupr990g00002 686 Pfam MCAfunc domain 40 158 IPR045766 -
Mupr990g00002 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 366 IPR013083 -
Mupr990g00002 686 PANTHER U BOX DOMAIN-CONTAINING 43 668 - -
Mupr990g00002 686 SUPERFAMILY ARM repeat 390 668 IPR016024 -
Mupr990g00002 686 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Mupr990g00002 686 FunFam RING-type E3 ubiquitin transferase 485 671 - -
Mupr990g00002 686 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Mupr990g00002 686 SMART arm_5 460 501 IPR000225 GO:0005515
Mupr990g00002 686 SMART arm_5 505 543 IPR000225 GO:0005515
Mupr990g00002 686 SMART arm_5 419 459 IPR000225 GO:0005515
Mupr990g00002 686 SMART arm_5 544 584 IPR000225 GO:0005515
Mupr990g00002 686 SMART arm_5 585 626 IPR000225 GO:0005515
Mupr990g00002 686 Pfam Armadillo/beta-catenin-like repeat 421 458 IPR000225 GO:0005515
Mupr990g00002 686 Pfam Armadillo/beta-catenin-like repeat 545 580 IPR000225 GO:0005515
Mupr990g00002 686 SUPERFAMILY RING/U-box 270 356 - -
Mupr990g00002 686 CDD RING-Ubox_PUB 281 333 IPR045210 -
Mupr990g00002 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr990g00002 Mupr-Chr990 9570 11973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr990g00002 18 669 U-box Gene Family AT3G46510 38.415 8.33e-131 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr990g00002 - - gmx:100793498 1110.9