Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9895g00001 ATGTCTCCACCAGTGCTGGTTACTGAAGACGAAGGGCAGAGCAACGCCTCAATGGTAGCATCTGCATCTTCACAATCCTTGGACTGTTTCTCCCTAAGTGAGGCTAGATTGAAAGAACGTAATTATCTGGGATTGTCAGATTGCTCTTCGGTGGACAGTTCTACTGTCCCAAGCTTGTCTGCTGAGAAAAAGGAGAACCTGAATTTGAAGGCTACTGAGTTGAGGCTAGGCCTTCCTGGATCCCAGTCACCTGAAAGGGATACAGATCTTTTCTCATTGAGTTCAACAAAACTTGATGAGAAGCCACTGTTCCCTTTGCTTCCTACAAAAGATGGAATCTGCTCCTTGTCCCAAAAACCCGTGGTTTCAGGCAACAAAAGAGGTTTCTCTGACACAATGGACCCTGAGTTTCCTGGCAATGCAGGGATAAACATGATGCTATCACCTAAATCTTCTGGAGCTCAGCCTAACACAGTGAAAGAAATGCCAAGCAAGGTGTTACAAGAACGGCCTTCTGCAGCAAATGGAACTGGTCATAATCATACAGGAGCTTCTATCAGTGGCAGTGCACCGGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCAGGTCCAGCTGCCCTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTGAGGAAGGTAGATCTAAGAAATTATACTACATACCTGGAACTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCAGAATATGTACTCACTTATGAAGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCTAGGGCCATGGAAAAATCCAAGAGTAGGAGCTAG 1050 0.4552 MSPPVLVTEDEGQSNASMVASASSQSLDCFSLSEARLKERNYLGLSDCSSVDSSTVPSLSAEKKENLNLKATELRLGLPGSQSPERDTDLFSLSSTKLDEKPLFPLLPTKDGICSLSQKPVVSGNKRGFSDTMDPEFPGNAGINMMLSPKSSGAQPNTVKEMPSKVLQERPSAANGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYLELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9895g00001 349 Pfam AUX/IAA family 72 340 IPR033389 -
Mupr9895g00001 349 FunFam Auxin-responsive protein 224 341 - -
Mupr9895g00001 349 SUPERFAMILY CAD & PB1 domains 227 330 - -
Mupr9895g00001 349 ProSiteProfiles PB1 domain profile. 229 333 IPR000270 GO:0005515
Mupr9895g00001 349 MobiDBLite consensus disorder prediction 7 24 - -
Mupr9895g00001 349 MobiDBLite consensus disorder prediction 170 192 - -
Mupr9895g00001 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 336 IPR003311 GO:0005634|GO:0006355
Mupr9895g00001 349 MobiDBLite consensus disorder prediction 168 192 - -
Mupr9895g00001 349 Gene3D - 226 343 - -
Mupr9895g00001 349 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9895g00001 Mupr-Chr9895 2424 5205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9895g00001 231 343 B3 DNA Binding Superfamily AT1G30330 27.434 2.51e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mupr9895g00001 AUX_IAA 1.6e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9895g00001 K14484 - gmx:100500373 630.943