Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr9887g00001 | ATGGCGCAGCTTCCGTGCGACTCAGATGGTGTGTGCATGGTTTGCAAACAGAAACCCTCTCCCTCCGAAACACTAGCGTGTCGCACGTGCGCCACTCCATGGCACCTTTCCTGCCTCCCTTCGCCACCTCTATCCCTCTCCGATACCCACTGGGACTGTCCTGATTGTTGCGCTGACTCTTTCCACCATCACCCCGTCGCTCCCGCCGCCGACCTTCTTTCCGCTATCCGGGCCATTCAGTCCGATGCGTCTCTCACTGACCAAGAGAAGGCTAAGAAGCGTCAAGAACTCGTTGGCGGCTCCTCCCATCCCTCTGGGGACAATAACAAAACTAAAGATATTTTTGACGGGACCTTAAACTGCGCGTTTTGCATGCAGTTGCCTGAAAGACCCGTCACGACACCTTGTGGGCACAACTTCTGCTTGAAATGTTTCCAGAAATGGATTGGACAGGGCAAGCATACCTGTGCAAATTGCCGCACTCAGATTCCACCGAAGATGGCGAGCCAGCCGCGAATCAACTCTCAGTTAGCCATGGCCATCCGATTAGCGAAGGTGGCTAAGTGTGGCTCTTCGGGTCCACCTAAGGTCTATCACTTTGTCCACAATCAGGACCGTCCTGACACCGCTTTCACCACAGAGCGAGCTAAGAAGCCTGGGAAGGCTAATGCATGTAGTGGCAAGATTTTTGTCACTGTTCCTCCTGACCATTTTGGACCTATTCCCGCTGAGAATGACCCTACCAGGAATCGAGGTGTTCTTGTTGGTGACACGTGGGAGGACAGGATGGAGTGTCGCCAGTGGGGTGCTCATTTGCCTCATGTTGCTGGTATTGCTGGGCAGAGTAGTTATGGTGCCCAGTCTGTTGCCCTTTCTGGTGGGTATGAGGATGATGAGGACCATGGGGAATGGTTCCTTTACACTGGCAGTGGTGGGAGAGATCTAAGTGGTAACAAACGCACCAATAAGTTACAATCCTTTGATCAGAAATTTGAAAGCATGAATGAGGCCTTAAGAGTAAGTTGTCGAAAGGGTTATCCTGTTCGTGTTGTAAGGTCGCACAAGGAAAAACGATCTTCTTATGCACCAGAATCTGGGGTGCGCTATGATGGTGTTTATAGAATAGAGAAATGCTGGCGCAAAAAAGGAATGCAAGGTTGCAAGGTTTGTAGGTATTTGTTTGTGAGATGTGACAATGAGCCAGCACCATGGACAAGTGATGAAGTTGGAGACCGACCGGGTCCACTGCCTATAATTGGGGAGTTGAAGGGTGCAATTGATATAACAGAAAGGAAGGGTGATCCATCATGGGATTATGATGTAAGGTCTCACTCTGCTTTTGATGAAATTCAGGAAAAAAAGGAGTGCTGGTGTTGGAAGAAGTCTCCACCCAAAAGCAGGAAATCGGTGGACATTGTAAAATCTGAAGATGGGAAAACAATCAGACTTAGACGAAAAGCAAAAAATGTGTCTGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCAAATCTGTCGCAAGGTGTTGGCTTTCCCTCTGACGACACCTTGCGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCTGGCCAGAGTTTCATCAGAAACAGAGCATGTCAAGGTGGACGAACTTTACGAACACAGAAGAATGTTATGAAATGCCCATCATGTTCAAATGACATTGCTGACTTTCTTCAGAATCCACAGGTTAACAGAGAAATGATGGGTTTCATAGAAACACTCCAGCACCAGGCAGAACAGGATGAAAATTCTGGAGAGTCAAGTGATAAAAATGATGAAAATTCTGAAGAGTCAAGTGATAAACATGATGAAAATCTGCATGATGCGACAGAGGTTTCAAAACCTAGTGATTCTAGTGAGAAGGTCCTGGAGGAAATTAAGGACAATGATTTGAATCAACCACACAAGCGGAGGAAAGAGTGA | 1950 | 0.4764 | MAQLPCDSDGVCMVCKQKPSPSETLACRTCATPWHLSCLPSPPLSLSDTHWDCPDCCADSFHHHPVAPAADLLSAIRAIQSDASLTDQEKAKKRQELVGGSSHPSGDNNKTKDIFDGTLNCAFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKHTCANCRTQIPPKMASQPRINSQLAMAIRLAKVAKCGSSGPPKVYHFVHNQDRPDTAFTTERAKKPGKANACSGKIFVTVPPDHFGPIPAENDPTRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSSYGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFESMNEALRVSCRKGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKKGMQGCKVCRYLFVRCDNEPAPWTSDEVGDRPGPLPIIGELKGAIDITERKGDPSWDYDVRSHSAFDEIQEKKECWCWKKSPPKSRKSVDIVKSEDGKTIRLRRKAKNVSVKERLLKEFGCQICRKVLAFPLTTPCAHNFCKACLEGAFSGQSFIRNRACQGGRTLRTQKNVMKCPSCSNDIADFLQNPQVNREMMGFIETLQHQAEQDENSGESSDKNDENSEESSDKHDENLHDATEVSKPSDSSEKVLEEIKDNDLNQPHKRRKE | 649 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr9887g00001 | 649 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 488 | 613 | IPR013083 | - | |
| Mupr9887g00001 | 649 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 488 | 614 | - | - | |
| Mupr9887g00001 | 649 | SMART | G9a_1 | 243 | 400 | IPR003105 | - | |
| Mupr9887g00001 | 649 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 219 | 414 | - | - | |
| Mupr9887g00001 | 649 | SMART | PHD_3 | 11 | 57 | IPR001965 | - | |
| Mupr9887g00001 | 649 | Pfam | Zinc finger, C3HC4 type (RING finger) | 119 | 163 | - | - | |
| Mupr9887g00001 | 649 | MobiDBLite | consensus disorder prediction | 85 | 110 | - | - | |
| Mupr9887g00001 | 649 | SUPERFAMILY | FYVE/PHD zinc finger | 5 | 59 | IPR011011 | - | |
| Mupr9887g00001 | 649 | Pfam | SAD/SRA domain | 251 | 399 | IPR003105 | - | |
| Mupr9887g00001 | 649 | ProSitePatterns | Zinc finger PHD-type signature. | 12 | 56 | IPR019786 | - | |
| Mupr9887g00001 | 649 | SUPERFAMILY | RING/U-box | 114 | 167 | - | - | |
| Mupr9887g00001 | 649 | ProSiteProfiles | YDG domain profile. | 248 | 396 | IPR003105 | - | |
| Mupr9887g00001 | 649 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 2 | 599 | IPR045134 | - | |
| Mupr9887g00001 | 649 | SUPERFAMILY | PUA domain-like | 222 | 413 | IPR015947 | - | |
| Mupr9887g00001 | 649 | ProSitePatterns | Zinc finger RING-type signature. | 517 | 526 | IPR017907 | - | |
| Mupr9887g00001 | 649 | CDD | RING-HC_ORTHRUS_rpt1 | 119 | 164 | IPR047498 | - | |
| Mupr9887g00001 | 649 | ProSiteProfiles | Zinc finger RING-type profile. | 502 | 560 | IPR001841 | - | |
| Mupr9887g00001 | 649 | MobiDBLite | consensus disorder prediction | 591 | 649 | - | - | |
| Mupr9887g00001 | 649 | Pfam | RING-type zinc-finger | 502 | 557 | IPR027370 | - | |
| Mupr9887g00001 | 649 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 186 | IPR013083 | - | |
| Mupr9887g00001 | 649 | ProSiteProfiles | Zinc finger PHD-type profile. | 9 | 59 | IPR019787 | - | |
| Mupr9887g00001 | 649 | ProSiteProfiles | Zinc finger RING-type profile. | 121 | 160 | IPR001841 | - | |
| Mupr9887g00001 | 649 | MobiDBLite | consensus disorder prediction | 586 | 649 | - | - | |
| Mupr9887g00001 | 649 | SMART | ring_2 | 121 | 159 | IPR001841 | - | |
| Mupr9887g00001 | 649 | SMART | ring_2 | 12 | 56 | IPR001841 | - | |
| Mupr9887g00001 | 649 | SMART | ring_2 | 502 | 559 | IPR001841 | - | |
| Mupr9887g00001 | 649 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 71 | IPR013083 | - | |
| Mupr9887g00001 | 649 | Gene3D | - | 219 | 412 | IPR036987 | - | |
| Mupr9887g00001 | 649 | SUPERFAMILY | RING/U-box | 483 | 534 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr9887g00001 | Mupr-Chr9887 | 2664 | 5775 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr9887g00001 | 3 | 593 | C2H2 Transcription Factor Family | AT5G39550 | 60.465 | 0.0 | 732 |