Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9877g00001 ATGAGGGATTACCAACTAGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTAATGGGCTATTTGCATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGAGACATATAAGAGAGGAATTATTGGTTGCTGGGAAGTTTGATGTTTGTGTCACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGCTACATAATTATAGATGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAATACAAACTATCGCCTCCTTATTACTGGCACACCCCTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGCCCGTTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTTAAGGTAGGCATGTCCCAAATGCAGAAACAGTATTATAGAGCATTACTTCAGAAGGATCTTGAGGTTGTAAATGCTGGGGGTGAACGGAAGCGCCTCCTGAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGACTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTACTTAATGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGTGGTGATGATCGAGATGCTTCTATTGATGCTTTCAATAAACCAGGAAGTGAGAAATTTGTCTTCCTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGTTTTTGTACTGAGTATACAATTGAGGAGAAAGTCATTGAAAGGGCCTACAAAAAACTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTGGCGGAGCAGAAGACGGTAAATAAGGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACGGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAGAAGGATGAGAACAGATTTGATTTCAAAAAAATTGTGAGTGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTTAAGCAAACAATGCGCCAAGGTGGTCCTACCAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGTTGCATGATTTCCAGTTTTTCAATACACAAAGGTTGAGTGAGCTGTACGAGAAGGAAGTACGCTATCTTATGCAAACACACCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCATCATGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGTGAAAAATATGGCCGAAATGATATAAGAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAAGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCTAGAATTTCTCGAAAAGATGAGATCATGAAAGCTATCGGGAAAAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGATACAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAGTTAAAGGCAGCATTTCGAACTTCACCTTTGTTTCGATTCGACTGGTTTGTCAAGTCTCGCACAACTCAGGAACTGGCAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTCGCCAAAAGCATGACCCCATCAAAGCGTACATTGTCAAGACTGACAGACAGTCCATCTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGATGATTATGCAAGCACGAAC 2616 0.4094 MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIRSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRTLSRLTDSPSSLKKRKQLTMDDYASTN 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9877g00001 872 FunFam ISWI chromatin-remodeling complex ATPase CHR11 222 514 - -
Mupr9877g00001 872 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 564 654 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mupr9877g00001 872 Gene3D ISWI, HAND domain 553 651 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mupr9877g00001 872 Gene3D - 740 843 - -
Mupr9877g00001 872 SUPERFAMILY Homeodomain-like 707 829 IPR009057 -
Mupr9877g00001 872 Gene3D - 652 706 - -
Mupr9877g00001 872 MobiDBLite consensus disorder prediction 826 840 - -
Mupr9877g00001 872 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 860 - -
Mupr9877g00001 872 Pfam HAND 565 647 IPR015194 GO:0003677|GO:0006338|GO:0031491
Mupr9877g00001 872 FunFam ISWI chromatin-remodeling complex ATPase CHR11 740 843 - -
Mupr9877g00001 872 ProSiteProfiles SANT domain profile. 651 703 IPR017884 -
Mupr9877g00001 872 Pfam SNF2-related domain 14 281 IPR000330 GO:0005524|GO:0140658
Mupr9877g00001 872 SMART ultradead3 1 189 IPR014001 -
Mupr9877g00001 872 FunFam Chromatin-remodeling complex ATPase 2 217 - -
Mupr9877g00001 872 Gene3D - 2 217 IPR038718 -
Mupr9877g00001 872 CDD SANT 655 699 IPR001005 -
Mupr9877g00001 872 FunFam ISWI chromatin-remodeling complex ATPase CHR11 553 651 - -
Mupr9877g00001 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 216 IPR027417 -
Mupr9877g00001 872 Pfam Helicase conserved C-terminal domain 304 416 IPR001650 -
Mupr9877g00001 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 499 IPR027417 -
Mupr9877g00001 872 CDD SF2_C_SNF 302 427 - -
Mupr9877g00001 872 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 13 178 IPR014001 -
Mupr9877g00001 872 MobiDBLite consensus disorder prediction 826 872 - -
Mupr9877g00001 872 SMART sant 652 701 IPR001005 -
Mupr9877g00001 872 SMART sant 754 815 IPR001005 -
Mupr9877g00001 872 SMART helicmild6 332 416 IPR001650 -
Mupr9877g00001 872 Pfam SLIDE 709 819 IPR015195 GO:0003677|GO:0005634|GO:0006338
Mupr9877g00001 872 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 652 706 - -
Mupr9877g00001 872 Gene3D iswi atpase 707 739 - -
Mupr9877g00001 872 CDD DEXHc_SMARCA1_SMARCA5 1 218 IPR044754 GO:0005524
Mupr9877g00001 872 Gene3D - 222 514 IPR027417 -
Mupr9877g00001 872 Coils Coil 809 836 - -
Mupr9877g00001 872 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 306 457 IPR001650 -
Mupr9877g00001 872 SUPERFAMILY Homeodomain-like 655 705 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9877g00001 Mupr-Chr9877 313 7018 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9877g00001 22 443 RAD5 or RAD16-like Gene Family AT1G02670 27.129 1.09e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr9877g00001 SNF2_N 1.6e-71 CL0023