Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9875g00005 ATGGCTTCCATCACAGGTGTAGGTGTCTCCTCTTCCATTTCCACATACAAAATCCCCTCTCTTCAACTCCTCAAAAGACCAACCTCCGTTACCTTCTCCACCTCCCACACTCTTCCCCGTAATGCCACGCTCTCTTCCGCCATTGCCACCCCCACCTCATCCATCGTTACTCAACAACCCTTCAACGGTCTCACTTTGGACGACGTTACCGATAACTACGAACCCGACACCCCTGCCCACGTCAGTGACCACGAACTCGACATTTCCAAGTTGCCTTTACCTTCGCGCCTGGTCCACTCGCTACACAACCGTGGCATCACTAGCCTTTTCCCCATTCAGAGAGCTGTGCTAGTTCCTGCACTAGAAGGTAAAGATATCATTGCTCGAGCAAAGACTGGTACTGGGAAGACATTAGCATTCGGAATTCCAATTCTTAAAGGCCTCACCGATGAAGAACAAAGTCCTCACAGAAGGACTGGTAAACTTCCTAAAGCGTTGGTCCTTGCACCTACTAGAGAGTTAGCCAAGCAAGTTGAGAAAGAGATACAAGAATCTGCACCTTACCTCAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGTAACACAGCAGAATGCGCTTTCCCGCGGTGTTGATGTGGTGGTTGGAACGCCTGGGAGAATAATTGACCTAGTGAATGGAAACAGCCTTAAACTGAGTGAGGTTCAGTACTTGGTCCTTGATGAAGCTGATCGGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTCATTTTGGAAAAGGTCCCGGCGCACCGCCAGACCATGCTTTTTTCTGCAACCATGCCTGCTTGGGTCAAGAAACTGTCCAGAAAATATTTGAACAATCCATTGACAATTGATTTGGTTGGTGAACAAGATGAGAAGCTTGCCGAAGGGATCAAACTTTATGCTTTATCAGCCACTGCCACTTCAAAACGGATACTTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATTGTTTTCACACAGACAAAAAAGGATGCCGATGAAGTATCATTGGCATTAACAAGTAGTATAGCTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTTACAGTGCTTGTTGCCACTGATGTTGCTGCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGTACTGGGCGTGCAGGAAAAGCGGGTACTGCCATTCTGATGTACACCAGTAGCCAAAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGCAGCAAATTTGAATTTATTAGTCCACCAGCTTTGGAAGAGATTTTGGGGTCATCTGCTGAGCAAGTTGTTGCTACACTTGATAAAGTTCATCCTGAGTCTGTTGAATTTTTCACTGCAACTGCACAAAAACTGGTTGAAGAACAAGGAGTAAGTGCCCTTGCGGCTGCTCTAGCACTGCTGAGTGGATTCTCTCGACCTCCGTCATGTCGGTCTCTTATCAATCATGAACAGGGATGGATTACATTGCAACTGACTCGAGATCTAGATAATTCTGGAAGATTTTTTTCAGCAAGATCTGTCACTGGGTTTCTTTCTGATGTTTATTCTACAGCTGCTGATGAAGTTGGAAAAATATATTTAATTGCAGATGAGAAGGTTCAAGGAGCTGTTTTTGATCTTCCGGAGGAAATTGCTAGAGAGTTGCTCAATAAGAATGTGCCATCTGGAAACACTATTTCCAAAATCACCAAGTTACCTCCTTTGCAAGACGATGAACCTGCAAGTGACTTCTATGGGAAGTTTTCTGACAATGATAGAAGTAACCGAAGAGGTTCTAGTTCTAGGGATCAGAGAGGTTTTAGAAGTTCACGGGGTTGGGAAGGAGGCAAAGACTCTGATGATGAGTTTGGTGGTCGAAGTTTTAGATCTGCAGGCAACAACAGGTCCCGAGTGGGAAAAAGGAGCAGCGGGGATGACTGGCTAATTGGTGGTAGACGATCAAGCAGGGATTCATCATCAAACAGTTTCTTCCTATTCATTGGTGTGTACATTGCAGAGGTGGCCATGGAGGGGCCTGTTTTAATTGTGGACAATTTGGGCATCGGGCATCTGATTGTCCCAAAAAACGAGACTTTTTCTAGTTTCTACATCTTTCGCTTTCGCACCACCTATCTAGTCCAAGAATTCACCTGCCACTGTAAAAGGTGA 2283 0.4494 MASITGVGVSSSISTYKIPSLQLLKRPTSVTFSTSHTLPRNATLSSAIATPTSSIVTQQPFNGLTLDDVTDNYEPDTPAHVSDHELDISKLPLPSRLVHSLHNRGITSLFPIQRAVLVPALEGKDIIARAKTGTGKTLAFGIPILKGLTDEEQSPHRRTGKLPKALVLAPTRELAKQVEKEIQESAPYLNTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADRMLAVGFEEDVEVILEKVPAHRQTMLFSATMPAWVKKLSRKYLNNPLTIDLVGEQDEKLAEGIKLYALSATATSKRILLSDLITVYAKGGKTIVFTQTKKDADEVSLALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKAGTAILMYTSSQRRTVRSLERDVGSKFEFISPPALEEILGSSAEQVVATLDKVHPESVEFFTATAQKLVEEQGVSALAAALALLSGFSRPPSCRSLINHEQGWITLQLTRDLDNSGRFFSARSVTGFLSDVYSTAADEVGKIYLIADEKVQGAVFDLPEEIARELLNKNVPSGNTISKITKLPPLQDDEPASDFYGKFSDNDRSNRRGSSSRDQRGFRSSRGWEGGKDSDDEFGGRSFRSAGNNRSRVGKRSSGDDWLIGGRRSSRDSSSNSFFLFIGVYIAEVAMEGPVLIVDNLGIGHLIVPKNETFSSFYIFRFRTTYLVQEFTCHCKR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9875g00005 760 Pfam GUCT (NUC152) domain 514 614 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mupr9875g00005 760 SMART helicmild6 347 427 IPR001650 -
Mupr9875g00005 760 SMART ultradead3 105 310 IPR014001 -
Mupr9875g00005 760 MobiDBLite consensus disorder prediction 621 663 - -
Mupr9875g00005 760 CDD GUCT_Hera 522 601 - -
Mupr9875g00005 760 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 239 247 IPR000629 -
Mupr9875g00005 760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 467 IPR001650 -
Mupr9875g00005 760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 293 IPR014001 -
Mupr9875g00005 760 MobiDBLite consensus disorder prediction 604 680 - -
Mupr9875g00005 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 448 IPR027417 -
Mupr9875g00005 760 Gene3D - 87 297 IPR027417 -
Mupr9875g00005 760 Pfam Helicase conserved C-terminal domain 323 427 IPR001650 -
Mupr9875g00005 760 Gene3D - 312 509 IPR027417 -
Mupr9875g00005 760 FunFam ATP-dependent RNA helicase RhlE 78 296 - -
Mupr9875g00005 760 CDD DEADc 97 294 - -
Mupr9875g00005 760 FunFam Nucleolar RNA helicase II 315 505 - -
Mupr9875g00005 760 Pfam DEAD/DEAH box helicase 110 282 IPR011545 GO:0003676|GO:0005524
Mupr9875g00005 760 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 85 673 - -
Mupr9875g00005 760 CDD SF2_C_DEAD 319 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9875g00005 Mupr-Chr9875 33485 39064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9875g00005 91 449 Eukaryotic Initiation Factors Gene Family AT1G72730 35.989 1.11e-63 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9875g00005 - - gmx:100815040 1093.57