LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr9825g00003	ATGGATTCGGATCAGGGCAAGCTTTTCATCGGTGGGATTTCGTGGGACACTACGGAGGACAAGCTCAAGGAGCATTTTGGCAACTACGGCGACGTTTTGAGCACTTCCGTTATGCGGGAGAAGAACACCGGCAAGCCAAGGGGCTTCGGTTTCGTCGTCTTTGCAGATCCTTCTATTCTAGATAGGGTTCTCGAGGACAAACATGTTATTGACGGCAGAACGGTTGATGCCAAAAAGGCCTTCTCAAGAGAGGATCAACAAATTTCTGTCACTTCAAGAGCTGGAAACCCCAATTCTGGGATGAATTCTGGAAATGGGGGAAATATCAGGACCAAAAAGATATTTGTTGGAGGGTTGCCTCCCACCCTGACTGAAGAAAAATTTCGTCAGTACTTTGAGTCCTATGGACATGTAACTGATGTAGTAGTAATGTATGACCAGAATACTGGTCGACCTAGAGGATTTGGGTTTATTTCATTTGATACTGAGGAGGCGGTTGATAGGGTTTTGCACAAATCATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTATGATGGGTGGTGCCGGAGGTGGTGGTGCTGGAATTGGTGGGTATCAAGGGTATGGGGCATCTGGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCTCAAAGTGCTGCAGGTGGATTCCCTCCTTATGGTTCTTCTGCCTATAGTGCTCCTGGGTATGGGTATGGCCCAGCCAATAATGGCATTGGATATGGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCTTCTGGTTATGGATCTATGGGCTATGGGAACACTGCTCCTTGGGGTGCTCCAAGTGGTGGTGCTGGATCTGGTGGTGGTGGTCCTGGTTCAGCAACTGCAGGTCAGTCCCCTGGTGGAGCTGCTGGATATGGTAATCAAGGTTACGGATATGGTGGGTATGGTGGATATGGTGGAAGTGATAGTTCTTATGGGAATTCGAGTGCATATGGTACTGTTGGTGGGCGAACTGGGAATGCTCCAAACAGTAATGCTAGTGGTCCTGGGGGCAGTGAATTAACAAGTAGTGGTGGCAGTGGCAGCTATATGGGTGGTGGCTATGGGGATGCAAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCTGAACAAACTCATGCATCTGGAAATTATGGGACTCCTCAGGGAAATGGTTCCCATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCATTGTGTACTGTGCCCATTTCCATATAAGGAGCGCGATTGA	1419	0.4877	MDSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRAGNPNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGAGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPANNGIGYGAYGSYGGATAGYGGPAGGPRSSWPAQAPSGYGSMGYGNTAPWGAPSGGAGSGGGGPGSATAGQSPGGAAGYGNQGYGYGGYGGYGGSDSSYGNSSAYGTVGGRTGNAPNSNASGPGGSELTSSGGSGSYMGGGYGDANGNSGYGNAAWRSEQTHASGNYGTPQGNGSHGGQVGYGGGYGGAQSRQAQQHCVLCPFPYKERD	472

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr9825g00003	472	CDD	RRM2_Hrp1p	113	190	-	-
	Mupr9825g00003	472	CDD	RRM1_hnRNPA_hnRNPD_like	8	78	-	-
	Mupr9825g00003	472	MobiDBLite	consensus disorder prediction	424	453	-	-
	Mupr9825g00003	472	MobiDBLite	consensus disorder prediction	86	107	-	-
	Mupr9825g00003	472	Gene3D	-	107	231	IPR012677	-
	Mupr9825g00003	472	SMART	rrm1_1	7	78	IPR000504	GO:0003723
	Mupr9825g00003	472	SMART	rrm1_1	113	185	IPR000504	GO:0003723
	Mupr9825g00003	472	Gene3D	-	4	88	IPR012677	-
	Mupr9825g00003	472	PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1	1	459	-	-
	Mupr9825g00003	472	MobiDBLite	consensus disorder prediction	377	396	-	-
	Mupr9825g00003	472	MobiDBLite	consensus disorder prediction	424	439	-	-
	Mupr9825g00003	472	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	112	189	IPR000504	GO:0003723
	Mupr9825g00003	472	FunFam	Heterogeneous nuclear ribonucleoprotein 1	5	87	-	-
	Mupr9825g00003	472	SUPERFAMILY	RNA-binding domain, RBD	110	218	IPR035979	GO:0003676
	Mupr9825g00003	472	FunFam	heterogeneous nuclear ribonucleoprotein 1	107	230	-	-
	Mupr9825g00003	472	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	8	75	IPR000504	GO:0003723
	Mupr9825g00003	472	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	114	180	IPR000504	GO:0003723
	Mupr9825g00003	472	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	6	82	IPR000504	GO:0003723
	Mupr9825g00003	472	SUPERFAMILY	RNA-binding domain, RBD	3	109	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr9825g00003	Mupr-Chr9825	26036	31065	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr9825g00003	8	200	Eukaryotic Initiation Factors Gene Family	AT2G23350	25.000	1.88e-08	55.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr9825g00003	K14411		-	gmx:100786882	623.239