Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9819g00004 ATGGCCAACGACTCGTCGTTTTTGTTCGCCGGCATTCGTTTCGATAGAAAGAAGTTCGGCGCCGATATTGCGAGGTTCCAGAAAAAAGACAGTGATACTGATTCGGCGAAGATTTCAAGCGCCGCTGAAGAAGAAAGCGAGAAAACAAGAGAAGCAGTGGAAGTGAAAGCAGCGTCCACGAAGAAGAGGAAGCGCAAGGGAACCTCTTCCGAAACGGTTGAAGGATTCAATGTGTTCAGAAATTCGACGTCTGTGGTGCAGTCGAATGATGAAGTTCGAGCTGATGAGGAGTCCGTTGAGCTGAGTGAGAAGAAGAAGGAGCAGAATAGGCAACTTGAGCGTGACGCAATATTCAGAAAGAAGCACAACATTCATGTCTCTGGTTATAACGTGCCATCTCCGCTTCAAAGCTTTGATGAATTAAAATCAAGATATAAATGTCCTTCATATTTGTTGCGCAATCTGAAAGAACTTGGATTCAAAGAACCAACACCTATCCAAAGGCAGGCTATTCCAGTACTTTTACATGGTCGTGAATGCTTTGCTTGTGCACCAACTGGCTCTGGGAAAACCTTTGCATTTGTGTGTCCAATGCTTATGAAGCTTAAGGATCCTGAAAAAGGTGGCATTCGAGCTGTTATCCTTTGTCCTACCCGTGAATTATCTGCTCAAACATATCGAGAGTGCAGAAAGCTTGCTAAAAGAAAAAAATTTCGAATCAAGTTAATGACCAAACATCTATTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCTACGCCACTTCGATTACGGTTGGCTATCAAGAGGAAGAAGGTTGATTTCAGCAGAGTTGAGTTTCTTGTTCTGGATGAATCGGATAAGCTATTTGAGCCGGTATTATTCAAGCAGATTGATTCCGTTATCAAGGCATGCTCCAATCCCTCAATAATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGTAGGAAGAATATGGCATCAGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGGCAAAGCTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTACGGTGAACTTGCATTTGACAACCTTAGAGTTGATGTCATCCATTCTGATTTATCTCAAGAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCCCGGGGTATGGATTTCAAAGGTGTGAACTGTGTGATAAATTATGATTTTCCTGATTCTGCTGCTGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGAGAAGCGATTACTTTTTACACAGAGGAAGACATTCCATTCCTAAAGAATGTTGCTAACCTTATGGCAGCGTCAGGCTGTGAGGTTCCGTCCTGGCTCATGGAGTTGCGCAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCAACTAAACCAGACCTATAA 1602 0.4245 MANDSSFLFAGIRFDRKKFGADIARFQKKDSDTDSAKISSAAEEESEKTREAVEVKAASTKKRKRKGTSSETVEGFNVFRNSTSVVQSNDEVRADEESVELSEKKKEQNRQLERDAIFRKKHNIHVSGYNVPSPLQSFDELKSRYKCPSYLLRNLKELGFKEPTPIQRQAIPVLLHGRECFACAPTGSGKTFAFVCPMLMKLKDPEKGGIRAVILCPTRELSAQTYRECRKLAKRKKFRIKLMTKHLLRNADFSKFPCDILISTPLRLRLAIKRKKVDFSRVEFLVLDESDKLFEPVLFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNLRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYVHRIGRSGRAGRSGEAITFYTEEDIPFLKNVANLMAASGCEVPSWLMELRKKKWKKHRPKRDSISTKPDL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9819g00004 533 SMART helicmild6 393 474 IPR001650 -
Mupr9819g00004 533 Pfam DEAD/DEAH box helicase 164 328 IPR011545 GO:0003676|GO:0005524
Mupr9819g00004 533 CDD SF2_C_DEAD 353 483 - -
Mupr9819g00004 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 341 IPR014001 -
Mupr9819g00004 533 MobiDBLite consensus disorder prediction 29 70 - -
Mupr9819g00004 533 CDD DEADc_DDX52 151 344 IPR044764 GO:0003724|GO:0005524|GO:0030490
Mupr9819g00004 533 Pfam Helicase conserved C-terminal domain 371 474 IPR001650 -
Mupr9819g00004 533 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 31 520 - -
Mupr9819g00004 533 Gene3D - 79 340 IPR027417 -
Mupr9819g00004 533 MobiDBLite consensus disorder prediction 29 72 - -
Mupr9819g00004 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 486 IPR027417 -
Mupr9819g00004 533 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 513 IPR001650 -
Mupr9819g00004 533 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Mupr9819g00004 533 Gene3D - 341 518 IPR027417 -
Mupr9819g00004 533 SMART ultradead3 159 356 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9819g00004 Mupr-Chr9819 14823 19960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9819g00004 134 512 Eukaryotic Initiation Factors Gene Family AT3G19760 31.234 9.69e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9819g00004 K14779 - gmx:100800969 935.636