Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9818g00004 ATGTCGATAAACCAAACGAGCCTATGGTGGCTCGACAATTCCAAGTCGAAGTCTCCCCGTTTCAACCTAAACGACGAGGATGAAGACGAGGACGTGGTGGTGATGGGAGGAACGCAAGAAGAGGAGAAGGAAGCCATGTTCGAGAAGCCTCTGACGCCAAGCGACGTGGGGAAGCTGAACAGGTTGGTGATCCCCAAGCAGCACGCTGAGAAGCACTTTCCCCTTGACTCGTCGGGGGACACAGCCAAGGGCTTGTTGCTCAGTTTCGAGGACGAGTCTGGCAAGTGCTGGAGATTCCGTTACTCCTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGTTGGAGTCGTTACGTCAAGGACAAACGCCTCCACGCTGGCGACGTCGTTTTCTTCCTCAGACACCGCCTCCATCCCCACCGCTTCTTCATCTCCTCCACCCGTCGCCTATCTAACCCCCCTGCCCCCTTCTTTTCTGCTCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCATTCCCACAACACTCTCTTCATGCACCACCAGCGTGGGCATTTGCACGTGTTGTAATGTTTGTAACAGGTGGAGGGTCCCAAGGACAGAAGGAAACGACACTAGCAGGGGGGAACAGTTCAAGTGGGAAGGTGCTAAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATCATGATTCCCAAACCTCCACACCAGAATGCTCTTACACGCAGACTACACTTACCCACCACTTACACCACCACCCCCATCAAACTTCTTATTCTTCTTCAAACCCTCACCATCACATGCTTGGGGTTAAGGCATGCCCTTAA 828 0.5338 MSINQTSLWWLDNSKSKSPRFNLNDEDEDEDVVVMGGTQEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLDSSGDTAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFLRHRLHPHRFFISSTRRLSNPPAPFFSAPLPLPLPLPLPFPQHSLHAPPAWAFARVVMFVTGGGSQGQKETTLAGGNSSSGKVLRLFGVNMECQPDHDSQTSTPECSYTQTTLTHHLHHHPHQTSYSSSNPHHHMLGVKACP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9818g00004 275 Pfam B3 DNA binding domain 47 135 IPR003340 GO:0003677
Mupr9818g00004 275 SMART B3_2 47 149 IPR003340 GO:0003677
Mupr9818g00004 275 Gene3D - 35 155 IPR015300 -
Mupr9818g00004 275 CDD B3_DNA 46 137 IPR003340 GO:0003677
Mupr9818g00004 275 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 236 IPR044800 GO:0003700
Mupr9818g00004 275 ProSiteProfiles B3 DNA-binding domain profile. 47 149 IPR003340 GO:0003677
Mupr9818g00004 275 MobiDBLite consensus disorder prediction 248 275 - -
Mupr9818g00004 275 SUPERFAMILY DNA-binding pseudobarrel domain 44 147 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9818g00004 Mupr-Chr9818 20020 21290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9818g00004 40 231 RAV Transcription Factor Family AT5G06250 47.317 4.34e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr9818g00004 B3 1.2e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9818g00004 K09287 - gmx:100781153 317.005