Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr980g00001 ATGGCGAAGGAGCTGGAGAAGAAAGCCAAGGAAGCATTCTTCGACGATGACTTCGCTCTCGCCGTTGATCTCTACTCTGAGGCCATCCAATTGGATCCAAACGACGCCCATCTCTTCGCCGACAGAGCCCAAGCCCATATTAAGCTCAAAGCTTTTACTGAAGCAATTTCCGATGCCAACAAAGCTATCCAATTAGACTCTTCATTGTTCAAAGCCTATCTTCGCAAAGGAACCGCTTGTATGAAGCTCGAAGAATATCACACTGCCAAGGTAGCGCTACAAAACGGTGCCGCTTTTGCACCAGACGATTCCAGATTTGCCAAGTTGATTCAAGAATGTGATCGTTGTATTGCAGAGGAATCAAATGGTCTTACTAGCTCCTTATCATCAAATGAGTCCATAACATCTGTACCATCTGGCTATGGTTCCCATTTGAGCAATAGAAATGATGGGATGACTAAAGAAGCTGAAGAAGACGGTTTGGTATCCCAAATCAATGAAGTCACACTAAACAGACCAAAATACAGACATGAATACTACCAGAAGCCAGAAGAAGTGGTTTTGACAATATTTGCAAAAGGAATATCAGCAAAAGATGTGGTTGTTGACTTCGGTGAACAGATTCTTAGTGTTACTATTGATGTTCCTGGCCAAGATGCCTATCATTATCAACCTCGATTGTTTGGGAAGGTAATACCCAATAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATTCGTCTTGCAAAAGCTGAAGCTATTACTTGGACATCTCTGGAATATAGCAAGGATACACTTCCCCCCAAAATAATTAAGCCTATAGTTCAATCTGAAAGACCTGCATACCCATCATCAAAACCAAGGACAAAAGATTGGGACAAGTTGGAAGCTCAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTTTTGGAGTCAAATGGAACAGTGCTGTCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGAAGCCATCATGACACAGGCACGTCAGTTGCCTATTTAA 1128 0.4211 MAKELEKKAKEAFFDDDFALAVDLYSEAIQLDPNDAHLFADRAQAHIKLKAFTEAISDANKAIQLDSSLFKAYLRKGTACMKLEEYHTAKVALQNGAAFAPDDSRFAKLIQECDRCIAEESNGLTSSLSSNESITSVPSGYGSHLSNRNDGMTKEAEEDGLVSQINEVTLNRPKYRHEYYQKPEEVVLTIFAKGISAKDVVVDFGEQILSVTIDVPGQDAYHYQPRLFGKVIPNNCRVEVLSTKIEIRLAKAEAITWTSLEYSKDTLPPKIIKPIVQSERPAYPSSKPRTKDWDKLEAQVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEAIMTQARQLPI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr980g00001 375 Pfam Tetratricopeptide repeat 38 67 IPR019734 GO:0005515
Mupr980g00001 375 SMART tpr_5 2 35 IPR019734 GO:0005515
Mupr980g00001 375 SMART tpr_5 70 103 IPR019734 GO:0005515
Mupr980g00001 375 SMART tpr_5 36 69 IPR019734 GO:0005515
Mupr980g00001 375 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Mupr980g00001 375 Pfam SGS domain 291 367 IPR007699 -
Mupr980g00001 375 ProSiteProfiles CS domain profile. 172 261 IPR007052 -
Mupr980g00001 375 PANTHER PROTEIN SGT1 HOMOLOG 1 366 IPR044563 GO:0051087
Mupr980g00001 375 FunFam Protein SGT1 homolog 1 127 - -
Mupr980g00001 375 FunFam Protein SGT1 homolog A 170 273 - -
Mupr980g00001 375 SUPERFAMILY HSP20-like chaperones 172 268 IPR008978 -
Mupr980g00001 375 Pfam CS domain 176 251 IPR007052 -
Mupr980g00001 375 Gene3D Tetratricopeptide repeat domain 1 132 IPR011990 GO:0005515
Mupr980g00001 375 ProSiteProfiles SGS domain profile. 282 373 IPR007699 -
Mupr980g00001 375 CDD p23_CS_SGT1_like 178 261 - -
Mupr980g00001 375 Gene3D - 173 264 IPR008978 -
Mupr980g00001 375 MobiDBLite consensus disorder prediction 354 375 - -
Mupr980g00001 375 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr980g00001 Mupr-Chr980 2110 6826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr980g00001 1 96 U-box Gene Family AT3G07370 34.375 5.28e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr980g00001 K12795 - gmx:100784022 591.267