LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr9728g00002	ATGCAAACTGGGACTTCTCATATATGGTCACTCACTCACATCACACACTGTGATAGTTGTAGCGGCGAAACTGAGATCGTAGAAAGAACCAAGCAAGAGATGGCAAAAGCGACGTCGTTGCTGCTCTGTACACTGCTCCTCTTCGGAACCCTAGCTCTAATCCAGGCGAAGAAATCGAAGGAGGAATTGAAGGAAGTGACTAACAAGGTTTACTTTGATATTGAGATTGATGGAAAAGCTGCAGGTCGTATTGTAATTGGTCTTTTTGGGAAGACAGTTCCAAAAACTGCAGAAAACTTCCGAGCTCTTTGCACAGGGGAAAAGGGAACTGGTAAAAGCGGAAAGCCTCTCCATTACAAAGGTAGCATATTCCATAGAATTATACCTAGCTTTATGATCCAAGGAGGTGATTTTACACAAGGCAATGGAATGGGTGGGGAATCAATTTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGATAAAGCATACTGGACCAGGGCTTCTATCAATGGCAAACGCGGGTCCTGATACCAATGGTTCACAATTTTTCATTACAACTGTGACAACTAGCTGGTTGGATGGAAGGCATGTTCTTTCCGGAATGGATGTTGTTTACAAGGTTGAAGCTGAAGGAAAGCAAAGTGGCACTCCCAAGAGCAAGGTTGTGATTGCCGATAGTGAGGAAACATCTTAA	696	0.4353	MQTGTSHIWSLTHITHCDSCSGETEIVERTKQEMAKATSLLLCTLLLFGTLALIQAKKSKEELKEVTNKVYFDIEIDGKAAGRIVIGLFGKTVPKTAENFRALCTGEKGTGKSGKPLHYKGSIFHRIIPSFMIQGGDFTQGNGMGGESIYGEKFADENFKIKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVLSGMDVVYKVEAEGKQSGTPKSKVVIADSEETS	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr9728g00002	231	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	71	227	IPR002130	GO:0000413\|GO:0003755
	Mupr9728g00002	231	Gene3D	-	55	231	IPR029000	-
	Mupr9728g00002	231	SUPERFAMILY	Cyclophilin-like	65	229	IPR029000	-
	Mupr9728g00002	231	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	71	229	IPR002130	GO:0000413\|GO:0003755
	Mupr9728g00002	231	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	124	136	IPR002130	GO:0000413\|GO:0003755
	Mupr9728g00002	231	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	182	194	IPR002130	GO:0000413\|GO:0003755
	Mupr9728g00002	231	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	167	182	IPR002130	GO:0000413\|GO:0003755
	Mupr9728g00002	231	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	88	103	IPR002130	GO:0000413\|GO:0003755
	Mupr9728g00002	231	FunFam	Peptidyl-prolyl cis-trans isomerase	63	231	-	-
	Mupr9728g00002	231	CDD	cyclophilin_ABH_like	69	227	-	-
	Mupr9728g00002	231	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	119	136	IPR020892	GO:0003755\|GO:0006457
	Mupr9728g00002	231	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	69	229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr9728g00002	Mupr-Chr9728	19384	22920	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr9728g00002	82	201	U-box Gene Family	AT5G67530	47.107	8.55e-25	100

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr9728g00002	K01802		-	gmx:100305485	348.206