Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9673g00001 ATGTCGACCTCTGCGGCTTCTCTTGCACTTCCCACACTCACTCTTCGAACCCGACAACCTCTGTGTTCACCACAATGCTTCTCCTCGTTTCTCTCCCTCACCCCAAACTCCAAACCCATCTCCATTTCCGCCGTTTTCCTTAAGCCCACGTTGTCGCTCTCGTCTCGCTTCATTCCCCGCGTCGCCGTTTCGGAGGTGGAGCAGGAAGAGGACACTTTCAGCGACGGAGACAGTCCCAGTTTCTCCCCCGACCTCAAGCTCTTTGTCGGGAACCTTCCCTTCCGCGTCGACAGTGCGCAACTCGCTGAGCTCTTCGAAAGCGCCGGGAATGTTGAGGTGGTTGAGGTTATTTACGACAAAACGACTGGGAGGAGTAGGGGGTTTGGGTTTGTGACCATGTCTTCGGTTGAGGAAGTTGAAGTGGCTGCTCAGCAGTTCAATGGCTATGAACTGGATGGAAGGGCATTGAGAGTGAATGCTGGGCCACCTCCTGCTCGGAATGAGGGTTTTCCTCCTCGTTTTAGAGGTGGTTCTTCCAGTTCCAGAGGTGGTGGTCCTTTAGATAGTGATAATCGTGTTCATGTAGGTAATCTGGCTTGGGGTGTTGACGATTCAGCACTTGAGACATTTTTTGGTGGAAAAGGGAAGGTCTTGGAAGCTAGGGTAATCTATGACAGGGAAAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTTCGGTAGCCCTGAAGAGGTCAACAATGCAATTCAGTCCTTAGATGGTGTGGAATTGAATGGCAGAGCTATACGAGTCTCATTAGCAGATTCTAAGCCCAAGCGATTTTGA 825 0.5103 MSTSAASLALPTLTLRTRQPLCSPQCFSSFLSLTPNSKPISISAVFLKPTLSLSSRFIPRVAVSEVEQEEDTFSDGDSPSFSPDLKLFVGNLPFRVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEVAAQQFNGYELDGRALRVNAGPPPARNEGFPPRFRGGSSSSRGGGPLDSDNRVHVGNLAWGVDDSALETFFGGKGKVLEARVIYDRESGRSRGFGFVTFGSPEEVNNAIQSLDGVELNGRAIRVSLADSKPKRF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9673g00001 274 SMART rrm1_1 192 265 IPR000504 GO:0003723
Mupr9673g00001 274 SMART rrm1_1 86 159 IPR000504 GO:0003723
Mupr9673g00001 274 SUPERFAMILY RNA-binding domain, RBD 80 189 IPR035979 GO:0003676
Mupr9673g00001 274 Gene3D - 188 273 IPR012677 -
Mupr9673g00001 274 Gene3D - 62 187 IPR012677 -
Mupr9673g00001 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Mupr9673g00001 274 PANTHER OS02G0815200 PROTEIN 56 270 - -
Mupr9673g00001 274 SUPERFAMILY RNA-binding domain, RBD 189 273 IPR035979 GO:0003676
Mupr9673g00001 274 FunFam Ribonucleoprotein A, chloroplastic 62 187 - -
Mupr9673g00001 274 MobiDBLite consensus disorder prediction 160 189 - -
Mupr9673g00001 274 CDD RRM2_NsCP33_like 192 267 - -
Mupr9673g00001 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 157 IPR000504 GO:0003723
Mupr9673g00001 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 263 IPR000504 GO:0003723
Mupr9673g00001 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9673g00001 Mupr-Chr9673 8694 11196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9673g00001 87 274 Eukaryotic Initiation Factors Gene Family AT3G16380 33.333 6.75e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9673g00001 - - gmx:100786275 424.091