Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9638g00005 ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTGAGAGATGAATTAGCCCAACAACAAAACCAAAGCAACTCCAACGCCTCCAAAGTCCCTTCAGCTTCTAACTCACTCAAAACACTTCTGGACTCTGCCACCCCCACACCCAGATTGTCCAAGAGAGAGAAACGCCGAAAGATTCGATCCTCGCAACACCCTTCTCCAGTACCCAACAAGGAATATGTAACACAGGGTTCTCCCAATAACAAGAGGAAGAGGAAGAGGAAGGTAGAGAACGATGACGTGGCAATTGGAGTTGCCAACGACAAAAAGAAGAAGAAGAAGAAAAAGAATAAGAATAAGAATAAGACAGCCAGAACTGCGGAAGAAAACGGTTCTAATGGTGGAGGGAAAATGCCAGAGGCTACAGAGTTAACCAAGAACGATACAACCACCAGTCAAGACAATGGTGATGTTGCTACAAAGGTTTATGTTGGAGGAATTCCCTATTATTCGACCGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAATTGAACTCGATTGCATGACTTTTCCTGAAACTGGCAAGTTTAGAGGAATTGCCATTATTAGTTTTAAGACTGAAGCGGCAGCCAAACGGGCATTGGCTCTTGATGGGGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGCCGGTAAAACATCAGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAATATACGTTGGAAATTTGTCATGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAAAAATTGTGATATAAAGTCCCTACGATTCGGTATGGACAAGGAGACTGGAGAATTTAGAGGGTATGCCCATGTGGATTTTGGTGATGGTCAGTCACTGAAAACAGCACTTAAATTGGATCAAAATGTTTTGTCTGGGAGACCTGTCAGGATAAGTTGTGCAGTTCCTCTGAAGAAAAAACCAGGAACTGATACAAGCTCTGTGTCCATGGTTAATGGAGTTGAAAGCAAATCAGATGGAGTTGATGGTGGCAAATCAAGCTCCACAGGAAGTGGCAAGATGAGGAGGAGGACTTGCTACGAGTGTGGTGAGAAAGGACATATTCTTTCAGCCTGCCCAAAGAAACAAATAATACGAGTGAGGGAGCTGCCTCCAAGTTTCTGGTTCCAATACAACATAGTACCTGAAAAGAAACTTACCAAAGCTATTGCTACGGCTACTGCTGGAATGGCAAAGCCACATCACCATCACAGTTTCTTGATTGAAGTTCCCTGA 1299 0.4288 MVLSNKKLKLKLRDELAQQQNQSNSNASKVPSASNSLKTLLDSATPTPRLSKREKRRKIRSSQHPSPVPNKEYVTQGSPNNKRKRKRKVENDDVAIGVANDKKKKKKKKNKNKNKTARTAEENGSNGGGKMPEATELTKNDTTTSQDNGDVATKVYVGGIPYYSTEDDIRSYFESCGTIIELDCMTFPETGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRAGKTSDFAPEILEGYNRIYVGNLSWDITEEELRKFFKNCDIKSLRFGMDKETGEFRGYAHVDFGDGQSLKTALKLDQNVLSGRPVRISCAVPLKKKPGTDTSSVSMVNGVESKSDGVDGGKSSSTGSGKMRRRTCYECGEKGHILSACPKKQIIRVRELPPSFWFQYNIVPEKKLTKAIATATAGMAKPHHHHSFLIEVP 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9638g00005 432 CDD RRM1_PHIP1 155 226 IPR034361 -
Mupr9638g00005 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 230 IPR000504 GO:0003723
Mupr9638g00005 432 SUPERFAMILY RNA-binding domain, RBD 150 230 IPR035979 GO:0003676
Mupr9638g00005 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 324 IPR000504 GO:0003723
Mupr9638g00005 432 SUPERFAMILY Retrovirus zinc finger-like domains 353 383 IPR036875 GO:0003676|GO:0008270
Mupr9638g00005 432 SMART rrm1_1 154 226 IPR000504 GO:0003723
Mupr9638g00005 432 SMART rrm1_1 249 320 IPR000504 GO:0003723
Mupr9638g00005 432 Gene3D - 13 238 IPR012677 -
Mupr9638g00005 432 MobiDBLite consensus disorder prediction 16 46 - -
Mupr9638g00005 432 MobiDBLite consensus disorder prediction 330 362 - -
Mupr9638g00005 432 Gene3D - 341 389 - -
Mupr9638g00005 432 SUPERFAMILY RNA-binding domain, RBD 242 343 IPR035979 GO:0003676
Mupr9638g00005 432 Coils Coil 103 123 - -
Mupr9638g00005 432 MobiDBLite consensus disorder prediction 85 100 - -
Mupr9638g00005 432 MobiDBLite consensus disorder prediction 63 77 - -
Mupr9638g00005 432 SMART c2hcfinal6 366 382 IPR001878 GO:0003676|GO:0008270
Mupr9638g00005 432 MobiDBLite consensus disorder prediction 16 148 - -
Mupr9638g00005 432 ProSiteProfiles Zinc finger CCHC-type profile. 367 382 IPR001878 GO:0003676|GO:0008270
Mupr9638g00005 432 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 37 229 - -
Mupr9638g00005 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 221 IPR000504 GO:0003723
Mupr9638g00005 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 317 IPR000504 GO:0003723
Mupr9638g00005 432 Pfam Zinc knuckle 365 382 IPR001878 GO:0003676|GO:0008270
Mupr9638g00005 432 Gene3D - 244 331 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9638g00005 Mupr-Chr9638 31581 34812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9638g00005 153 359 Eukaryotic Initiation Factors Gene Family AT2G36660 27.982 7.30e-08 52.8