Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9638g00001 ATGGCTAACTACTTGATGTTGCTTTCTCGAGGCAGCAACTATATGAACTCTTCCAACAACCGTGTCTTTGAGTGCAAAACTTGTAACCGGCAGTTCCAGTCGTTTCAGGCATTGGGTGGCCACCGTGCGAGTCACAAGAAGCCAAGGTTGATGGGAGAGAGTGATCATAACAACCAAGTGCTAATTCATGGTTCACCACCAAAGCCTAAAACACACGAGTGTTCCATTTGTGGATTGGAGTTTGCCATAGGACAAGCTTTGGGAGGACACATGAGGCGCCATAGAGCATCATCATCATCATCATCATCAAATGGAAACATGCACACTAATTCTTTGATCGATCTACCAAACAGGAACAACAAGGCTAAGAGAGTTTTGTTTCCGGATTTGAATTTGACGCCTTTAGAGAATGATTTGGAGTTTTTGAAGATTGGACAAGCAACTCCTTTGGTTCAGACAGGCATGATCCACGTTTTCAAGGAAAGGAAACACAAAATGAGTTTTCTAACTGGGAATAGAAAGCGATCTGCTTCTAATTAA 540 0.4278 MANYLMLLSRGSNYMNSSNNRVFECKTCNRQFQSFQALGGHRASHKKPRLMGESDHNNQVLIHGSPPKPKTHECSICGLEFAIGQALGGHMRRHRASSSSSSSNGNMHTNSLIDLPNRNNKAKRVLFPDLNLTPLENDLEFLKIGQATPLVQTGMIHVFKERKHKMSFLTGNRKRSASN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9638g00001 179 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Mupr9638g00001 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Mupr9638g00001 179 Gene3D Classic Zinc Finger 9 97 - -
Mupr9638g00001 179 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Mupr9638g00001 179 Coils Coil 174 179 - -
Mupr9638g00001 179 SUPERFAMILY beta-beta-alpha zinc fingers 21 94 IPR036236 -
Mupr9638g00001 179 Pfam C2H2-type zinc finger 22 48 - -
Mupr9638g00001 179 Pfam C2H2-type zinc finger 72 96 - -
Mupr9638g00001 179 MobiDBLite consensus disorder prediction 94 115 - -
Mupr9638g00001 179 SMART c2h2final6 23 45 IPR013087 -
Mupr9638g00001 179 SMART c2h2final6 72 94 IPR013087 -
Mupr9638g00001 179 PANTHER ZINC FINGER PROTEIN ZAT5 3 138 - -
Mupr9638g00001 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9638g00001 Mupr-Chr9638 2639 4012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9638g00001 1 146 C2H2 Transcription Factor Family AT2G28710 46.053 4.88e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr9638g00001 zf-C2H2_6 7.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9638g00001 - - gmx:100500316 228.794