Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9607g00003 ATGGAGGGGCGAAGTCGCTCCGTCGAAGACATATTCGACGATTTCAAGGGCCGAAGAGCCGGCATCATCAAGGCCCTTACCACCGATGTTGAAGATTTATACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCTAACGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTACCACCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTGACAGGAAACGACTATTCAATATGATCAATGATCTACCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTGAAGGAGAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCTTACTCTAAAGTGCGAGCCTCCGAAACCCAGGGTAGACTGTCAAAGGCATTACCATCAAAAGATGAGGATGAAGGACTAGAAGAGCAAGATGAGGATGAACATGGAGACACCTTGTGTGGGGCATGTGGTGAGCATTATGGAACTGATGAATTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACTCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAACAAGAGAGCTCGCTAA 747 0.4418 MEGRSRSVEDIFDDFKGRRAGIIKALTTDVEDLYSQCDPEKENLCLYGLPNEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGAAKKQVKEKSSVSNNSGSKSKSYSKVRASETQGRLSKALPSKDEDEGLEEQDEDEHGDTLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9607g00003 248 SMART PHD_3 195 243 IPR001965 -
Mupr9607g00003 248 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Mupr9607g00003 248 CDD PHD_AL_plant 195 245 IPR044104 -
Mupr9607g00003 248 FunFam PHD finger alfin-like protein 188 244 - -
Mupr9607g00003 248 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Mupr9607g00003 248 MobiDBLite consensus disorder prediction 141 191 - -
Mupr9607g00003 248 Pfam PHD-finger 196 245 IPR019787 -
Mupr9607g00003 248 PANTHER CPG BINDING PROTEIN 5 248 IPR045104 GO:0006355|GO:0042393
Mupr9607g00003 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Mupr9607g00003 248 MobiDBLite consensus disorder prediction 141 171 - -
Mupr9607g00003 248 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
Mupr9607g00003 248 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9607g00003 Mupr-Chr9607 13737 18168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9607g00003 6 248 Alfin-like Transcription Factor Family AT3G42790 75.720 7.27e-122 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mupr9607g00003 Alfin 1.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9607g00003 K26274 - gmx:100170696 424.861