Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9588g00001 ATGGAAAACGTTCCGGTGGTGTGCAAGGAAGACGATCAGATGGATTTGCCTCCTGGATTTCGGTTCCACCCCACCGATGAAGAGCTCATAAGCCATTACCTCTACAAGAAGGTTATTGACCCCAAGTTCTGCGCCAGGGCAATTGGTGAAGTCGACCTCAACAAGTCTGAGCCATGGGATTTGCCATGGAAAGCCAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCCACTGGCTTGAGAACCAACAGGGCCACAGAAGCAGGGTACTGGAAAGCTACAGGGAAAGACAAAGAAATTTTCAGAGGAAAATCGCTGGTTGGAATGAAGAAAACTCTGGTTTTCTACAGAGGTCGAGCCCCCAAAGGAGAGAAAAGCAACTGGGTGATGCACGAGTACAGACTGGAGGGTAAATTCTCCGTTCACAACCTCCCAAAAACTGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGCTCAGCTGGGAAGAAAACCCATATTTCGGGGATAATGAGGTTGGACTCATTTGCAACCGAATTGGGTTCTTCTGCTCTGCCACCCCTCTCGGATTCCTCGCCGCTCAATGATTCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATCTTCAAAGAAACCAAGAAGGGGTCTTGGATTCCTTCACCAACTCCTTTTACGGGGTTTCTTCAAATTCCTTGGACATTCTTCCCAGAATGCCACCTTCTGCCTCCTTCTACGCTCAACCTGCGCCTAATTTCACATTTCCAAGCTCCGTCTACGCTCTGCAGGACAACAACATCCTCAGAGCCTTGTGTGAAAACAATGGTTACAAGCCAGAGAGGGACATGATCAGTGTCTCCCAGGAAACGGGTCTCACCACTGAAACAACCTCTTCAAATTTTGATTTGGCTAGAAGACCCTTTGACAATCGCAACCATCCATCTGTTTCTGTTGCGCCGTTGGATCTTGATGGGAGAGGACCAAGAACAGCCTCGGATACAAGCTTGTTTTCTGAGGTAGCTTGTTCATCTTGCTTTTCTGGATTGGATCAGTATAGTCCAGCTAATACCGAGACCGTGACCAAGACCAAGAGCTTGATTCGGAACAAGTCAAGTGAGAACAAAGAATTTTCTGCCAGTGGAACCTCCAACATATTGGTATTGAAGATGACACGTAATAAAAATCCACGCAGGATCAGTGACAAGGCTACTGCTATAGAAAATCAAAGTATAAGGTCCCGTTCTACATGGGCCTATGAGGAATGA 1287 0.4693 MENVPVVCKEDDQMDLPPGFRFHPTDEELISHYLYKKVIDPKFCARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSFATELGSSALPPLSDSSPLNDSAYVPCFSNPIDLQRNQEGVLDSFTNSFYGVSSNSLDILPRMPPSASFYAQPAPNFTFPSSVYALQDNNILRALCENNGYKPERDMISVSQETGLTTETTSSNFDLARRPFDNRNHPSVSVAPLDLDGRGPRTASDTSLFSEVACSSCFSGLDQYSPANTETVTKTKSLIRNKSSENKEFSASGTSNILVLKMTRNKNPRRISDKATAIENQSIRSRSTWAYEE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9588g00001 428 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Mupr9588g00001 428 MobiDBLite consensus disorder prediction 310 337 - -
Mupr9588g00001 428 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Mupr9588g00001 428 FunFam NAC domain-containing protein 100-like 25 170 - -
Mupr9588g00001 428 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Mupr9588g00001 428 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Mupr9588g00001 428 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9588g00001 Mupr-Chr9588 9258 12288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9588g00001 14 331 NAC Transcription Factor Family AT5G07680 60.681 4.21e-136 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mupr9588g00001 NAM 5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9588g00001 - - gmx:100798002 608.601