Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9572g00002 TGGGTCTGGCTGTTAAATCTCGTCACTGTCCTGCTCCCAGGCTCGAGTTCCCGCGAAATTCCGAAACTCCTTTTTCCAGATCGCTGGAAAATTTTCCAATCTACGCTCTGGAACATGAGTAGCTTGGTGGAGAGGCTTCGTGTAAGATCGGATCGCAGGCCAATTTATAATATTGATGAGTCAGATGACGATGCTGATTTTTTGCCAAGAAAATCTGGGACAACTCAGGAGAAGTTAGAGAGGATAGTGAGAAGTGATGCGAAAGAGAATTTATGTCAAGCCTGTGGAGAAAATGAAAATCTTGTGAGCTGTGAAACTTGCACATATACTTACCACCCTAGGTGTTTACTTCCACCCATTAAAGGTCCCCTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGATTGTGAGATGCGCCCAACTACAGCTGCTGACAATGATGCCACAAAATTAGGGGTGCCAGAGAAAGAGTTTCTGAAAGCTTTTAAGACTCATCCTCGTCTAAAGACCAAGGTGAATAACTTCCATCAAAAAATGGCATCTGTCAATACTTCTGATGAAGACTTTGTTGCCATTCGACCTGAATGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGATGATGATGATGAGAGGGAATATCTTGTGAAGTGGAAGGAGCTTCCATATGATGAATGCTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAGATATCGGTCTAGATCCAGCAAATTTTCATCCAGTAAACAAAAAAACAGTGTTAAGGATGATATTGAATTGAAGAAACATCAGAAAGAATTTCAACATTATGAACATAGCCCTGAGTTTCTTTCAGGTACATTACATCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTAATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTTAAAGAGGGTGTCTCCCCACATCTGGTGGTTGCTCCACTTTCAACTTTGCGAAACTGGGAACGTGAATTCGCAACATGGGCACCTCAAATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTTATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAGATAATTAGTGAAAGCAAGCAAGACAGGATTAAGTTTGATGTTCTTTTAACATCTTATGAGATGATCAACTTTGATACAACATCACTAAAACCTATAAAATGGGAATGCATGATAGTTGATGAAGGTCACCGTCTCAAGAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTTCTCTTGACAGGAACTCCTCTTCAGTTGAAACATCCTAATGACAGCTTGTCTGATGCATTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGTTGGCCCCGCATCTCCTGCGGAGAGTGAAGAAAGATGTCATGAAAGAGCTACCTCCTAAAAAGGAACTTATTCTACGTATTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACACGTAATTATCAGATATTAACTCGTCGTGGTGGTGCACAGGCAAGATTGATGCTT 1797 0.3962 WVWLLNLVTVLLPGSSSREIPKLLFPDRWKIFQSTLWNMSSLVERLRVRSDRRPIYNIDESDDDADFLPRKSGTTQEKLERIVRSDAKENLCQACGENENLVSCETCTYTYHPRCLLPPIKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATKLGVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTSDEDFVAIRPEWTTVDRILACRGDDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRYRSRSSKFSSSKQKNSVKDDIELKKHQKEFQHYEHSPEFLSGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFKEGVSPHLVVAPLSTLRNWEREFATWAPQMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQIISESKQDRIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQLKHPNDSLSDAFQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAILTRNYQILTRRGGAQARLML 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9572g00002 599 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 313 499 IPR014001 -
Mupr9572g00002 599 ProSiteProfiles Zinc finger PHD-type profile. 89 136 IPR019787 -
Mupr9572g00002 599 ProSiteProfiles Rubredoxin-like domain profile. 99 143 IPR024934 GO:0005506
Mupr9572g00002 599 Pfam Chromo (CHRromatin Organisation MOdifier) domain 208 256 IPR023780 -
Mupr9572g00002 599 SMART PHD_3 91 134 IPR001965 -
Mupr9572g00002 599 SMART chromo_7 205 260 IPR000953 -
Mupr9572g00002 599 CDD CD2_tandem 205 255 - -
Mupr9572g00002 599 Gene3D - 557 586 IPR027417 -
Mupr9572g00002 599 Gene3D - 194 257 - -
Mupr9572g00002 599 SMART ultradead3 297 523 IPR014001 -
Mupr9572g00002 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 547 IPR027417 -
Mupr9572g00002 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 143 IPR013083 -
Mupr9572g00002 599 Pfam SNF2-related domain 321 587 IPR000330 GO:0005524|GO:0140658
Mupr9572g00002 599 Pfam PHD-finger 92 134 IPR019787 -
Mupr9572g00002 599 SUPERFAMILY Chromo domain-like 193 258 IPR016197 -
Mupr9572g00002 599 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 99 598 - -
Mupr9572g00002 599 Gene3D - 298 556 IPR038718 -
Mupr9572g00002 599 ProSitePatterns Zinc finger PHD-type signature. 92 133 IPR019786 -
Mupr9572g00002 599 ProSiteProfiles Chromo and chromo shadow domain profile. 207 267 IPR000953 -
Mupr9572g00002 599 SUPERFAMILY FYVE/PHD zinc finger 85 136 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9572g00002 Mupr-Chr9572 3511 15042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9572g00002 323 583 RAD5 or RAD16-like Gene Family AT5G22750 23.750 2.03e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr9572g00002 SNF2_N 2e-59 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9572g00002 K11643 - gmx:100790230 1012.68