Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9561g00002 ATGGCTAGTAAATTTCTTCACAAGCATCAGGAGAGGCCAATGCATTTTTTCAAGATCATAACCGCTTCCAACCTTCAAGACGGAAAGCTAATGATCCCAAATAAGTTTGTGGAGAAATATGGAGAAGGCTTACCGCAAACTCTATTTCTTAAGCCTCCAAATGGTGCAGAATGGAAATTGAGTTTGGAGAAACGCAGTGGTAAAATATGGTTTCGAAAGGGTTGGAAAGAATTTGCAGATTATCACTCTTTAGCTCATGGCCATCTTTTGTTTTTTAGATACCAAAGAACTTCCCTTTTCCAGGTACACATCTTTGATAGCACTGCCTTAGAGATAGACTACCCTATCGAAAACACCCAAAACAGAAAATATAACTCGTCATTGGAATTCCTTCAACCAGGTATGCGAAGTGGCATATGTGCTAAAGTTGATAATACCATGAAATTGACAAAAGCTTCTCCGCATCATACTGACAGAAAGTGCAAAGGAAAATTAATCACAACTAGTAAGCAAGTTACGGCTTTTGATAGAGCAAGTTGTTTCAGACCTTGTAATCCTTCTTTTCTGCTTGTCATGTGTCCATCGTATGTCCGTTCTCGGCACCCTTTGTATTTTCCATCTAAGTTTTCTAAGAGACACATTGATTTGCACGAGAAGAGGGGAGATATCAATCTTAAGATGTTAAGTGGGAGAGTTTGGCCTGCAAGATACCAAATACGGACAGTCGCTGCAAAAATAAGATTTGAACTCTATAGTGGATGGAAGACATTTGCTGAGGACAATAACTTAAAAGTAGGTGATGTTTGCATCTTTGAGCTCATTCCTGGAACAAAACTCACATTCCAGACAATTCAAATTGTTAAACATTTCAAGGTAGAATTGATATGTTTTATTTTAGTTTTTCAAACAATTCCTCGTATGTCAAATAAATATATTCTTCCATCATCTGCTGCAGACTCTGGTCAAATGGTAGCAGTTTACAAAAGACAGAGAAAAGAAATGAAAATCTTCACTACTACCAAATCGTCATTACTATCATACCCTAAACCCAATATTCGGCATTTT 1065 0.3737 MASKFLHKHQERPMHFFKIITASNLQDGKLMIPNKFVEKYGEGLPQTLFLKPPNGAEWKLSLEKRSGKIWFRKGWKEFADYHSLAHGHLLFFRYQRTSLFQVHIFDSTALEIDYPIENTQNRKYNSSLEFLQPGMRSGICAKVDNTMKLTKASPHHTDRKCKGKLITTSKQVTAFDRASCFRPCNPSFLLVMCPSYVRSRHPLYFPSKFSKRHIDLHEKRGDINLKMLSGRVWPARYQIRTVAAKIRFELYSGWKTFAEDNNLKVGDVCIFELIPGTKLTFQTIQIVKHFKVELICFILVFQTIPRMSNKYILPSSAADSGQMVAVYKRQRKEMKIFTTTKSSLLSYPKPNIRHF 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9561g00002 355 Gene3D - 7 109 IPR015300 -
Mupr9561g00002 355 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Mupr9561g00002 355 Gene3D - 165 290 IPR015300 -
Mupr9561g00002 355 ProSiteProfiles B3 DNA-binding domain profile. 188 287 IPR003340 GO:0003677
Mupr9561g00002 355 SUPERFAMILY DNA-binding pseudobarrel domain 182 282 IPR015300 -
Mupr9561g00002 355 PANTHER B3 DOMAIN-CONTAINING 10 278 - -
Mupr9561g00002 355 SUPERFAMILY DNA-binding pseudobarrel domain 11 107 IPR015300 -
Mupr9561g00002 355 CDD B3_DNA 15 106 IPR003340 GO:0003677
Mupr9561g00002 355 CDD B3_DNA 186 282 IPR003340 GO:0003677
Mupr9561g00002 355 SMART B3_2 188 287 IPR003340 GO:0003677
Mupr9561g00002 355 SMART B3_2 16 108 IPR003340 GO:0003677
Mupr9561g00002 355 Pfam B3 DNA binding domain 16 107 IPR003340 GO:0003677
Mupr9561g00002 355 Pfam B3 DNA binding domain 188 281 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9561g00002 Mupr-Chr9561 5984 9868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9561g00002 12 274 B3 DNA Binding Superfamily AT3G18990 29.483 9.49e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr9561g00002 B3 4.2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9561g00002 - - gmx:100819782 342.428