Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9555g00001 ATGCTGAGGGTAGAGACAACATTGGTGAGTGGTGACACTGATACAGCACAAAAAGTAAAATTAGGGATACATAACAAAGAGGCACATTTCAGCCCTCATTCAATGCTTTACCAAACTCACCATCCTCCTCTCTTTCAATTTCATCCCTTCACTTCTTCCACCACCCCTCACCTTTCAACAACACCATCATATCTACCTTCTCTTCTTCTCTCTCAGGCGGAAACGGAAATGGAGTGTTTAGAAGCAGCGTTGAAGAGCAGTGTTAGGAAAGACACGACCCTCAAACTCAGCCCCCAAACGTTTTTAGAGGAGTTGACGGCGCTTAACGTGCAAAACGTGGCTTCTTGCGACGACTTCTTCGTGGACGACCTCCTTGACTTTTCACTCCTCGAAAAAGAAGAACCAGACCAACACAACCACGACTCAGCCTGTGTTTCCCCACAGAACAAGAACCAGGAAATTTACAATTACAATCCCTCGTTCAACGACCATTTCACTAGCGAACTCACTGTTCCGGCGGAAGAAGTCGCAGACTTGGAATGGTTGTCCCATTTCGTTGAGGATTCTTTCTCCGAACATTCCATTTCCTTCCCCGTGGTAACCGCAACACAGAGCCTCGCGGAGAAAGCACCGGAACCGGGAAATACCGGTTTCACTTTTAAAACCCCGGTTCCGGCCAAGGCAAGGAGCAAGCGAACCCGAACCGGTGTTCGGGTTTGGCCACTCAGGTCCCCTTCGTTCACTGACACGTCATCAACCTCTTCCTCATCCTCGTCCTCGTCCTCACCCTCGAGCCCCTTGCTAATATGCGCCGCAGCGACACCGAGCCTCGACCCAGAGGAAAAGAGAGCGAAGAAAAGGGCCGCGCCGGACGGCGGCGCGGTCCAGACGGCGAGGCGGTGCAGCCATTGCGGCGTCCAGAAAACCCCTCAGTGGCGAACCGGACCGCTCGGGCCGAAGACTCTATGCAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGTTATTACCCGAATATAGACCCGCGTGTAGCCCTACTTTTTCAAGCGAGTTGCACTCGAACCACCACCGGAAGGTGCTGGAGATGCGGCGGAAGAATGAGGTGGCGGCTGGACCGGACGCCGGTTCGACACCGTCGGTTCCCGGTTTTTGA 1152 0.5347 MLRVETTLVSGDTDTAQKVKLGIHNKEAHFSPHSMLYQTHHPPLFQFHPFTSSTTPHLSTTPSYLPSLLLSQAETEMECLEAALKSSVRKDTTLKLSPQTFLEELTALNVQNVASCDDFFVDDLLDFSLLEKEEPDQHNHDSACVSPQNKNQEIYNYNPSFNDHFTSELTVPAEEVADLEWLSHFVEDSFSEHSISFPVVTATQSLAEKAPEPGNTGFTFKTPVPAKARSKRTRTGVRVWPLRSPSFTDTSSTSSSSSSSSSPSSPLLICAAATPSLDPEEKRAKKRAAPDGGAVQTARRCSHCGVQKTPQWRTGPLGPKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKNEVAAGPDAGSTPSVPGF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9555g00001 383 Pfam GATA zinc finger 301 335 IPR000679 GO:0006355|GO:0043565
Mupr9555g00001 383 ProSitePatterns GATA-type zinc finger domain. 301 326 IPR000679 GO:0006355|GO:0043565
Mupr9555g00001 383 PANTHER GATA TRANSCRIPTION FACTOR 107 377 - -
Mupr9555g00001 383 SMART GATA_3 295 349 IPR000679 GO:0006355|GO:0043565
Mupr9555g00001 383 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 296 357 - -
Mupr9555g00001 383 Gene3D - 293 367 IPR013088 GO:0006355|GO:0008270
Mupr9555g00001 383 MobiDBLite consensus disorder prediction 208 266 - -
Mupr9555g00001 383 Coils Coil 70 90 - -
Mupr9555g00001 383 CDD ZnF_GATA 300 348 IPR000679 GO:0006355|GO:0043565
Mupr9555g00001 383 MobiDBLite consensus disorder prediction 244 266 - -
Mupr9555g00001 383 ProSiteProfiles GATA-type zinc finger domain profile. 295 331 IPR000679 GO:0006355|GO:0043565
Mupr9555g00001 383 FunFam GATA transcription factor 293 375 - -
Mupr9555g00001 383 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9555g00001 Mupr-Chr9555 4877 6273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9555g00001 81 383 C2C2-Gata Transcription Factor Family AT5G66320 50.445 5.35e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mupr9555g00001 GATA 2.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9555g00001 - - pvu:PHAVU_003G258900g 455.292