Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr952g00008 ATGGCGGACGTTGAGGTTGATGTCGCGGCAGGAGGCCAGCCGAAGAAGAGAACATTCAAGAAGTTCAGTTTCAGGGGCGTGGATCTCGATGCGCTTCTCGACATGTCCACTGATGAACTCGTCAAGATGTTCAGTGCCCGTGCTCGCAGAAGGTTCCAGAGAGGCCTCACCAGAAAGCCCATGGCTCTGATTAAGAAGCTTCGCAAAGCGAAAAGGGAAGCACCACCCGGTGAGAAGCCAGAGCCAGTTCGCACCCACCTCCGCAACATGATTATTGTGCCAGAGATGATTGGTAGCATTATTGGAGTATACAATGGCAAGACCTTTAACCAGGTTGAAATCAAACCCGAGATGATTGGGCATTATCTTGCAGAGTTCTCTATTTCATACAAACCTGTTAAGCACGGGAGACCTGGTATTGGTGCTACTCACTCATCCAGTTATGTTATGAATGGGAGTGACTGCACACAAATGTGA 477 0.4927 MADVEVDVAAGGQPKKRTFKKFSFRGVDLDALLDMSTDELVKMFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSSYVMNGSDCTQM 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr952g00008 158 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 9 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr952g00008 158 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 9 148 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr952g00008 158 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr952g00008 158 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr952g00008 158 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr952g00008 158 NCBIfam 30S ribosomal protein S19 19 149 IPR005713 GO:0003735|GO:0006412|GO:0015935
Mupr952g00008 158 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Mupr952g00008 158 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr952g00008 158 FunFam 40S ribosomal protein S15 9 150 - -
Mupr952g00008 158 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr952g00008 158 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Mupr952g00008 158 Gene3D 30s Ribosomal Protein S19; Chain A 9 150 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr952g00008 Mupr-Chr952 45452 47417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr952g00008 1 149 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 85.235 3.14e-89 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr952g00008 K02958 - gmx:100499781 286.96