Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr94g00004 ATGAGATTCCTAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCTGATTCGGAATTCTCTTTCATTCCAAGGCATAACTTGTATCCAGGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCCCCTCACCCCTCGTGCAATCCCACGAGCCTCTTATCCATTCTCAATTATTATTCGATCACGGCATCCAAATAGAAAAACTTACATTGGGTTTAGGGATAATCAGGCTCGAACTGATAACTTCCACCACGTCAAGATCGACATGAGAGTCCAACCACATTGCATTGCCAGAACCCGTCATCGAAAGGATCTCGAAGACCCACCAACGCACGAAAGCCTGGATCTTTCAGAAAATGGATTTCTGAGTGGCAGTAAGGGTGATTTATCTGTCAACTTTTCCACTATTACACCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATTACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGACTCAATCGTACGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAAGGAAGGGAAACGGATACTCAATTTCAAAAGAAAAAACCGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGCTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCTATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTGGGCGGATCGACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAAATGAAAACTTCATTCTCGATTCTACAAGAATTTTTATGAAAGCCTTTCATTTGCCTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCCTAATTTTTGGCCTAATTCTTCTTCTGATGATTGATTCAACCTCTGATCAAAAAGATATATCTTGGTTCTATTTTATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCCCTATTGTTCCGATGGAGAGAAGAACCTATGATTAGCTTTTCGGGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGAGTACATTGAATGTACAGAAATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGCGCTAACGATTTAATAACTATCTTTGTAGCTCTAGAATGTTTCAGTTTATGCTCCTATCTACTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCACGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATCGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTTAATTGCACTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGATGCTACATAGTTGGTTCTCATCCTTCAGAGACTACGAAAGTGAGGAATCCTCTTTTCGACTCTGACTCTCCCACTCCAGTCGTTGCTTTTCTTTCTGTTACTTCGAAAGTAGCTGCTTCAGCTTCAGCCACTCGAATTTTCGATATCCCTTTTTATTTCTCATCAAACGAATGGCATCTTCTTCTGGAAATCCTAGCTATTCTTAGCATGATATTTGGGAATCTCATTGCTATTACCCAAACAAGCATGAAACGTATGCTTGCGTATTCGTCCATAGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTGTATCATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACGAAAGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGGTTTTTTCGGAAAACTTCATTTATTCTGGTGTGGATGGCAGGCAGGCTTATATTTCTTGGTTTCAATAGGACTCCTTACGAGCGTTGTTTCTATCTACTATTATCTAAAAATAATCAAGTTATTAATGACTGGACGAAACCAAGAAATAACTCCTCACGTGCGAAATTATAGAAGGTCCCCTTTAAGATCAAACAATTCCATCGAATTGAGTATGATTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCTATTATTGAAATTGCTCAGGATACCCTTTTTTAG 2670 0.3933 MRFLVALLIASLFVDKADSEFSFIPRHNLYPGASYSPGVRSQKYSPLTPRAIPRASYPFSIIIRSRHPNRKTYIGFRDNQARTDNFHHVKIDMRVQPHCIARTRHRKDLEDPPTHESLDLSENGFLSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALTQSYGYVKYRISNPSRKRKGNGYSISKEKTAKSDPIYRNRLVNMLANRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELNENFILDSTRIFMKAFHLPLFDGSFIFPECILIFGLILLLMIDSTSDQKDISWFYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGILIALIFITVGIGFKLSPAPSHQWTPDVYEGVRCYIVGSHPSETTKVRNPLFDSDSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMIFGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNLGTFACIVSFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGWQAGLYFLVSIGLLTSVVSIYYYLKIIKLLMTGRNQEITPHVRNYRRSPLRSNNSIELSMIVCVIASTIPGISMNPIIEIAQDTLF 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr94g00004 889 NCBIfam 30S ribosomal protein S12 132 216 IPR005679 GO:0003735|GO:0006412|GO:0015935
Mupr94g00004 889 ProSitePatterns Ribosomal protein S7 signature. 257 283 IPR020606 GO:0003723|GO:0003735|GO:0006412
Mupr94g00004 889 SUPERFAMILY Nucleic acid-binding proteins 135 216 IPR012340 -
Mupr94g00004 889 Pfam Proton-conducting membrane transporter 638 821 IPR001750 -
Mupr94g00004 889 Pfam Proton-conducting membrane transporter 501 614 IPR001750 -
Mupr94g00004 889 Hamap NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 382 881 IPR010096 GO:0008137|GO:0042773
Mupr94g00004 889 Gene3D Ribosomal protein S7 domain 240 371 IPR036823 -
Mupr94g00004 889 Pfam NAD(P)H-quinone oxidoreductase subunit 2 N-terminal 373 472 IPR045693 -
Mupr94g00004 889 Gene3D - 99 228 IPR012340 -
Mupr94g00004 889 PRINTS Ribosomal protein S12 signature 177 194 IPR006032 GO:0003735|GO:0005840|GO:0006412
Mupr94g00004 889 PRINTS Ribosomal protein S12 signature 194 210 IPR006032 GO:0003735|GO:0005840|GO:0006412
Mupr94g00004 889 PRINTS Ribosomal protein S12 signature 142 157 IPR006032 GO:0003735|GO:0005840|GO:0006412
Mupr94g00004 889 PRINTS Ribosomal protein S12 signature 158 177 IPR006032 GO:0003735|GO:0005840|GO:0006412
Mupr94g00004 889 SUPERFAMILY Ribosomal protein S7 243 362 IPR036823 -
Mupr94g00004 889 Pfam Ribosomal protein S7p/S5e 245 362 IPR023798 -
Mupr94g00004 889 CDD Ribosomal_S12 139 210 IPR005679 GO:0003735|GO:0006412|GO:0015935
Mupr94g00004 889 ProSitePatterns Ribosomal protein S12 signature. 143 150 IPR006032 GO:0003735|GO:0005840|GO:0006412
Mupr94g00004 889 PANTHER NADH DEHYDROGENASE 393 886 - -
Mupr94g00004 889 NCBIfam 30S ribosomal protein S7 245 364 IPR005717 GO:0003735|GO:0006412|GO:0015935
Mupr94g00004 889 CDD uS7_Chloroplast 247 361 - -
Mupr94g00004 889 Pfam Ribosomal protein S12/S23 135 213 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr94g00004 Mupr-Chr94 8399 14351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr94g00004 140 199 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 44.118 1.20e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr94g00004 K05573 - twl:119993131 1149.04