Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9449g00001 ATGGACATCATGACTGCCTTACAGCTTGTGCTGAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGTCTTCACGAAGGTGCTAAGGTGATTGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGATTGTGACCAGCCTGATTATGTGAAACTGGTGAAGGCCCTTTGTGCAGAGCACAGTGTTAGCCTTCTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGTAAGATTGATTCAGAAGGAAAGGCTAGGAAGGTAACTGGTTGCTCATGTGTGGTTGTCAAGGATTTCGGGGAGGAACATGAAGCATATAATGTTGTTCTGCAGCATAAGCGCAGAGCTAGGGATTTCGGCGTTTGCTCCTCATCAACATCAAGGAAGCAGAGCGTGTCTTTTGAAATCAAGAAGAAGAGATGTCAGGAAGGAGCTGTTGTAGCTGAGCCAGCTGCTTCAATTCCAGGTGAGCCAATGGACATCATGACTGCCTTACAGCTTGTGTTAAGAAAATCTCTAGCTTATCATGGTCTTGCACGAGGTCTTCATGAAAGTGCTAAGGTGATTGAAAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGATTGTGACCAGCCTGATTATGTGAAACTGGTGAAGGCCCTTTGTGCAGAGCACAATGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACTCTTGGAGAATGGGCTGGTTTATGTAAGATTGATTCAGAAGGAAAGGCTAGGAAAGTATCCGGTTGCTCATGTGTGGTTGTCAAGGATTTTGGGGAGGAACATGAAGCATATAATGTTGTTCTGCAGCATGTGAAAGCTCACTGA 849 0.4582 MDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHSVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHKRRARDFGVCSSSTSRKQSVSFEIKKKRCQEGAVVAEPAASIPGEPMDIMTALQLVLRKSLAYHGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVSGCSCVVVKDFGEEHEAYNVVLQHVKAH 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9449g00001 282 SUPERFAMILY L30e-like 162 280 IPR029064 -
Mupr9449g00001 282 SUPERFAMILY L30e-like 2 116 IPR029064 -
Mupr9449g00001 282 Gene3D - 1 119 IPR029064 -
Mupr9449g00001 282 Gene3D - 151 282 IPR029064 -
Mupr9449g00001 282 PANTHER 40S RIBOSOMAL PROTEIN S12 158 282 - -
Mupr9449g00001 282 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 168 261 IPR004038 -
Mupr9449g00001 282 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 6 99 IPR004038 -
Mupr9449g00001 282 FunFam 40S ribosomal protein S12 149 282 - -
Mupr9449g00001 282 PRINTS Ribosomal protein S12E family signature 24 40 IPR000530 GO:0003735|GO:0005840|GO:0006412
Mupr9449g00001 282 PRINTS Ribosomal protein S12E family signature 65 86 IPR000530 GO:0003735|GO:0005840|GO:0006412
Mupr9449g00001 282 PRINTS Ribosomal protein S12E family signature 10 23 IPR000530 GO:0003735|GO:0005840|GO:0006412
Mupr9449g00001 282 PRINTS Ribosomal protein S12E family signature 90 103 IPR000530 GO:0003735|GO:0005840|GO:0006412
Mupr9449g00001 282 ProSitePatterns Ribosomal protein S12e signature. 6 24 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9449g00001 Mupr-Chr9449 10084 16696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9449g00001 158 282 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 73.600 1.27e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9449g00001 K02951 - gmx:100500093 257.684