Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9442g00001 ATGTCCTTCCGCAGTATTGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCGCGGCGGAGTTTTGAGGTAAGGCTTCCTGGTCATCACTGGGGCAAGTCGAATAGTTCAGTCCATGAGGTGCACGAATGTGTGCCGGTAATACAGAACAGCCGCTGGGCTAGCCTTCCACCCGAGCTTCTTCGTGATGTTATTAAAAGATTGGAAGAAAGTGAGAGTACTTGGCCTGCTCGTCAGCATGTGGTTGCATGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGCCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTCAAGCAGCCTGGTTCAAAGGATGGAACCATCCAGTGTTTTATCAAGAGGGACAAATCTAATCTGACTTACCACCTATTCCTCTGTCTTAGTCCTGCATTGCTAGTTGAAAATGGAAAATTTCTTCTTTCTGCAAAACGGACCAGAAGAACGACATGCACGGAGTATATTATATCAATGAATGCGGATAACATATCTAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTATAACAATTCCCAGCTGTCTCCTCCCGGCCGAAGCCGTAGGTTTTATTCGAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAGTATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGCACCAGGGGCCCGCGCAGGATGAACTGCACCATGCACTCAATCCCTACATCATCCCTTGAGCCTGGGGGCACTGTCCCAGGCCAGCCAGAGCTTCTTCCCCGCTCTCTCGAAGATTCCTTCCGCAGCATATCCTTTGCCAGATCAATCGACAACTCAACCGAGTTCAGCAGCTCTAGGTTCTCAGACATAGTTGTGGCAGGCAATGAAGAGGAGCAGCAGGGAAAGGATAGACCTTTAGTTCTCAAGAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTTAGGGGAAGGGTGACCGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCTGCAATGCCGCCACCTCCAGCCGGTGCTCCTACCCCGTCGTCTCAGCCGACTCAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGACATATTTACTATGGACTATAGATATCCCTTGTCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAA 1281 0.477 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHWGKSNSSVHEVHECVPVIQNSRWASLPPELLRDVIKRLEESESTWPARQHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSKDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMNADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFYSKKVSPKVPSGSYSIAQITYELNVLGTRGPRRMNCTMHSIPTSSLEPGGTVPGQPELLPRSLEDSFRSISFARSIDNSTEFSSSRFSDIVVAGNEEEQQGKDRPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAMPPPPAGAPTPSSQPTQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9442g00001 427 Pfam F-box domain 53 99 IPR001810 GO:0005515
Mupr9442g00001 427 Gene3D - 48 100 - -
Mupr9442g00001 427 FunFam Tubby-like F-box protein 110 427 - -
Mupr9442g00001 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Mupr9442g00001 427 Gene3D Tubby Protein; Chain A 112 421 IPR025659 -
Mupr9442g00001 427 FunFam Tubby-like F-box protein 48 101 - -
Mupr9442g00001 427 Pfam Tub family 114 422 IPR000007 -
Mupr9442g00001 427 SUPERFAMILY Tubby C-terminal domain-like 102 427 IPR025659 -
Mupr9442g00001 427 CDD F-box_AtTLP-like 53 97 - -
Mupr9442g00001 427 PANTHER TUBBY-RELATED 47 425 - -
Mupr9442g00001 427 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
Mupr9442g00001 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Mupr9442g00001 427 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Mupr9442g00001 427 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Mupr9442g00001 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Mupr9442g00001 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Mupr9442g00001 427 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Mupr9442g00001 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Mupr9442g00001 427 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9442g00001 Mupr-Chr9442 717 4516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9442g00001 1 427 TUB Transcription Factor Family AT1G76900 69.717 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mupr9442g00001 Tub 2e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9442g00001 K19600 - gmx:100803729 790.03