Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9398g00005 ATGCCACTTTGCTGGAAGTGGGTGTCCTTCTGGCTAGGGTTTCTGGAGATGGTGAGGGGAAAGGTTCAAATAAAGAAAATTGAGGATACAACAAGCCGTCAAGTGACCTTTTCAAAGCGTCGAAGTGGTCTTCTAAAGAAAGCTTACGAGCTATCCGTTCTTTGTGATGCCGAAGTAGCTGTCATAGTCTTCTCACAGAATGGAAGGCTCTATGAGTTCTCAAGTTCTGAGTACGACACTGTAGAGAAGGAGGTGCTCGTGGCTAAATTATTGCCTTTCGCCATTAATTTTAAGGATGATTTCATTATTTATGTAAAATTGGGCAGATCATATTATGTGTAA 342 0.4152 MPLCWKWVSFWLGFLEMVRGKVQIKKIEDTTSRQVTFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEFSSSEYDTVEKEVLVAKLLPFAINFKDDFIIYVKLGRSYYV 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9398g00005 113 Gene3D - 29 92 IPR036879 GO:0003677|GO:0046983
Mupr9398g00005 113 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Mupr9398g00005 113 CDD MADS_MEF2_like 19 76 IPR033896 GO:0000977|GO:0045944
Mupr9398g00005 113 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Mupr9398g00005 113 SUPERFAMILY SRF-like 19 82 IPR036879 GO:0003677|GO:0046983
Mupr9398g00005 113 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Mupr9398g00005 113 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 79 - -
Mupr9398g00005 113 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Mupr9398g00005 113 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Mupr9398g00005 113 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Mupr9398g00005 113 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9398g00005 Mupr-Chr9398 12080 14569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9398g00005 17 83 MADS-box Gene Family AT5G62165 73.529 7.46e-32 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr9398g00005 SRF-TF 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9398g00005 - - gmx:100800580 121.324