Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9386g00001 ATGGCGGACGAGGGATTCAATTGCCCGTACCTGTTGGACGATGACGGGGACGCCGCCGATGACGATAAGCTCTGTATCGATCTGGACACCATGATGAGCGTTCTCGACGAGGATACCGATCCCTCCGAGAGTAGTCCAGAGGATTCTTCATTGAAAAATATTTCACCTGGTGAATCTGGCATCAATGATAATTTTCTACTTCAAAATGGGAATTATGCGCTTAACTGTGAACATGAAAACCAGGGACCTTCATCACAGACTCTCTCTTCCCCAAATGCTCTTGCTGGTGGTTACAGGGACTCCTTCTCTGTGGTCGGAAGTGATGAAATTTGCTTCACAGAAATTACAAGAGTTTCTAATTCTCAGCTACCTGCTTACCTTGTGGACACAAGGTTCCCTGATCCTGAGGCAAATTCAAGCAACATAGCTGTCTGTGGAGATAATTTGAATATGACCCTGTGGAAGTGTGAAAATGACAGCCAAATCAAGCATGTAGGATATGATGCAGAATCTGAACATGCTTCACATGGCTCTAACATCGAAAATGTTGATATAAATTTTGAAGATTATGGAACCTATACAAAAGACATAATTGGAGTTTCTGGGAAACAGGAAAATGACTCATGTACATCTTTTGAAATGTCGTTTGTGGATGCTGATGGATCTTCACATGTTGCAACTTCAACTGATTCTTCTATTTGTCAAGGTTCCAATGTTCCCAGTGATTTTAGTGACTATTATTCATCTTTGAATTGCTACCAAGGTATGGATGATAGACTTGTTGCCAACACTTCTGGTTGTTTGTCTAATGGTGCTTATCCTCACATGTCGAAAAATGAAGAAACGATGAGGAAAATGAAGGTTGCTAAAATTGAGTTCTTTGCTGATACAGCACATGTGAATATTGGCATGCATTCCAGCACTAATGCTTGGATACCTTTTCAAGAAAGTCAAATTATGTATGCAGATGGTAAATATGCATCATTTTTTCCTGGTAATGTTCTCTTTGAAGACAATGCATCAGTGCAAAATTCAACTCACGCTTCATATATTTCAAGTGAAGATCAATCACTTAATGTCAAAGCTGAAAGAGATGAACTGATTATGCCTTATCAAAATTCTGTTCACAGTGATGATACTGAGTTCAATGCAGGCCAAGAGATGAAACGATTACCTGGTATTTTCCCTGCTGTTGGATATCGAGGTAATGATTTATTCAAGTGCAAGGATAATGTTACAATTGCAATGACCGAGAAAGCCATTTATTATCAAGATGCTATTGATGGAACTGTCAATAACTTTCCAGGAAACATGGGAAATTTGAATTTAAAATCATTAGACAATTCTTTTTATAATGGCCAGACATCAATTGCCAGTGGGAATCAGTATAATTGTGTTGTGGGTGAAGGAGAGGGCAGAACAATTGAACATAGAAGTATTAATTCTCAACATTCAAAAGGAAGTATTGAGAGATCCTATATTGAGGATGATTCTGATGTTTGTATTATTGAAGACATCAGTCACCCTGCACCTATAAGTCGAGCAGTAGAGCTTGGGAATTCCCTTAATACATCACAATTTTCTAGATGTGGTTATACTCATTCTTATATGGTGGGAGGTACGAAGCCAAAGGCGCGTGATGAGCAGTACATATTACGAGTTGCATTGCAGGACCTATCCCAGCCAAAGTCAGAGGTTAGTCCACCGGATGGACTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGCTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCAACCATTGCTTTAATATTAAAGGAAAGACCTCCATTGCTGAATAGATGCAACAATGCACAAAAGAGTGAGTTAGAAACTTTGAATCTGGACGCGGATGATGATCAGCTTCCTGAGAATGGTGTAGTGAAGAAAGAATCTAATATGTGTCAGGATTTGTCTAGTAGAAATCTAAACAAGAGCATGAATTTGTTAATGCATGGAAAGGGAAGGCCATCTGCAGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGACAATGGGCTGATGAGTTGCACAATAAGGTAACCTGCAAAGCAAATCTTTCTGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAATATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAAAAAGGAACTTATGATGATCAAGCAGTACCAAGTAAGAAAAGGAAATGCCCTCCTAGTTCTAGTAAAAGTGGCAAGAAGGGATTGGACAGTGCGATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCCAAGCGTAGATGGTGCTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACGTCATTCTGTTCCACAATTAAGATCCCAATAAGCAGAAATCCATCGAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATAATGTTACGTCGGACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTAAAGAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCCCGGGCACAATTTCAGGAATATGCTGATGCTGGAACAGTGAAGCAAAACTATGTTAACATTTTGCTGATGCTTTTGCGCCTTAGGCAAGCTTGCGATCATCCTCTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACGATTATCTCTTCTAAAATGTTTAGAGGCTTCCTTGGCCCTCTGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCGGTTTGTGGTCATGTTTTTTGTAACCAGTGCATCTGTGAACTTCTTACTGGTGATGACAATCAATGCCCTTATACAAATTGCAAAACTCGACTAAGCATGTCTTCAGTGTTTTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAAGCGTGTGATAATTTGCCTGGTAACTCTGGTTGTGAAGTGGAGGAATCTGAGTTTTGTTCTCAGACTCAGCCGTATGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCAATCATTGTCTAAACCACAATGCTGTCCTTCCCAAAAAAATTCTGTGCAGAGCACTTCTGGGGAAAGTACTGGTGGCCTTGGTAGCTCGTTTTGTGCTGACAGAATGAAATCCTTAAATGAATTTCCTGAGAATCAAAATGTGTCTGAGGAGAGAAGCTCAGATAATTCAGTTGGTGTAGGGGAGAAAGCTATAGTGTTCTCTCAGTGGACAAGGATGCTAGATTTGCTTGAAGCATGTCTTAAGAATTCTTCGATCCAGTATAGAAGACTTGATGGAACAATGTCAGTCACAGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTACCTGAGGTTTCAGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCCGCCTGCCATGTTCTTATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAGGCAATAGACAGAGCGCATCGAATTGGACAGACTCGTCCTGTCACAGTTTTACGGTTGACAGTTAAAGATACAGTTGAAGACCGTATATTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCATCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 3993 0.406 MADEGFNCPYLLDDDGDAADDDKLCIDLDTMMSVLDEDTDPSESSPEDSSLKNISPGESGINDNFLLQNGNYALNCEHENQGPSSQTLSSPNALAGGYRDSFSVVGSDEICFTEITRVSNSQLPAYLVDTRFPDPEANSSNIAVCGDNLNMTLWKCENDSQIKHVGYDAESEHASHGSNIENVDINFEDYGTYTKDIIGVSGKQENDSCTSFEMSFVDADGSSHVATSTDSSICQGSNVPSDFSDYYSSLNCYQGMDDRLVANTSGCLSNGAYPHMSKNEETMRKMKVAKIEFFADTAHVNIGMHSSTNAWIPFQESQIMYADGKYASFFPGNVLFEDNASVQNSTHASYISSEDQSLNVKAERDELIMPYQNSVHSDDTEFNAGQEMKRLPGIFPAVGYRGNDLFKCKDNVTIAMTEKAIYYQDAIDGTVNNFPGNMGNLNLKSLDNSFYNGQTSIASGNQYNCVVGEGEGRTIEHRSINSQHSKGSIERSYIEDDSDVCIIEDISHPAPISRAVELGNSLNTSQFSRCGYTHSYMVGGTKPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNRCNNAQKSELETLNLDADDDQLPENGVVKKESNMCQDLSSRNLNKSMNLLMHGKGRPSAGTLIVCPTSVLRQWADELHNKVTCKANLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDQAVPSKKRKCPPSSSKSGKKGLDSAMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEKRLSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICELLTGDDNQCPYTNCKTRLSMSSVFSKVTLNSSFSDQACDNLPGNSGCEVEESEFCSQTQPYDSSKIKAALEVLQSLSKPQCCPSQKNSVQSTSGESTGGLGSSFCADRMKSLNEFPENQNVSEERSSDNSVGVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr9386g00001 1330 Gene3D - 669 760 IPR038718 -
Mupr9386g00001 1330 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 353 1329 - -
Mupr9386g00001 1330 ProSiteProfiles Zinc finger RING-type profile. 1015 1054 IPR001841 -
Mupr9386g00001 1330 Gene3D - 914 1329 IPR027417 -
Mupr9386g00001 1330 Pfam Helicase conserved C-terminal domain 1173 1272 IPR001650 -
Mupr9386g00001 1330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1008 1066 IPR013083 -
Mupr9386g00001 1330 SMART ring_2 1015 1053 IPR001841 -
Mupr9386g00001 1330 MobiDBLite consensus disorder prediction 753 773 - -
Mupr9386g00001 1330 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 781 911 - -
Mupr9386g00001 1330 Gene3D - 774 912 IPR038718 -
Mupr9386g00001 1330 MobiDBLite consensus disorder prediction 753 788 - -
Mupr9386g00001 1330 CDD DEXDc_SHPRH-like 577 899 - -
Mupr9386g00001 1330 MobiDBLite consensus disorder prediction 36 57 - -
Mupr9386g00001 1330 SUPERFAMILY RING/U-box 1012 1064 - -
Mupr9386g00001 1330 ProSitePatterns Zinc finger RING-type signature. 1030 1039 IPR017907 -
Mupr9386g00001 1330 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1157 1325 IPR001650 -
Mupr9386g00001 1330 SMART helicmild6 1189 1272 IPR001650 -
Mupr9386g00001 1330 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 671 758 - -
Mupr9386g00001 1330 MobiDBLite consensus disorder prediction 1120 1139 - -
Mupr9386g00001 1330 Gene3D - 547 640 IPR038718 -
Mupr9386g00001 1330 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 592 861 IPR014001 -
Mupr9386g00001 1330 SMART ultradead3 573 876 IPR014001 -
Mupr9386g00001 1330 Pfam SNF2-related domain 597 976 IPR000330 GO:0005524|GO:0140658
Mupr9386g00001 1330 Pfam Zinc finger, C3HC4 type (RING finger) 1015 1051 IPR018957 GO:0046872
Mupr9386g00001 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 907 1329 IPR027417 -
Mupr9386g00001 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 899 IPR027417 -
Mupr9386g00001 1330 CDD SF2_C_SNF 1175 1282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr9386g00001 Mupr-Chr9386 2100 10226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9386g00001 448 1329 RAD5 or RAD16-like Gene Family AT1G61140 60.483 0.0 1003
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr9386g00001 SNF2_N 2.9e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9386g00001 - - gmx:100805307 2108.95