Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr9378g00002 ATGAATAATTTCTCAAAACTCAACGACTCGCCCATGTTCCGGCAACAGCTCCAATGCATGGAAGAGAGTTCAGAATCGTTACGCGCGAGATGTTGTAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGACTTGGAGAAGCATATGATGGAGACATTGCATTTGCAACTGCCCTTGAAAGTTTTGGAGGAGGACATAGTGATCCTCTATTTGTAACTTTGGGAGGACCTGTTATAACCAAATTTGCTATTGCTACGAGAGAAATCGGTACATACAAGGAACTTCTTAGGTCGCAGGTGGAACACATGCTGAATGACCGGGTACTAAACATGCTAAACGTCGATATACTTGATGTCAAGGAAGCTCGAAGGCGTTTTGATAAAGCTTCCCTTGTACATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACTAGGGTGGATATTGCCGCTGTGGTAGAAGAGGAATTGCACAATTCAAGAAACTCGTTTGAGGAAGCTCGTTTCAATCTGGTTAGTGCTCTTCATAGTGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCAGTCACTGGAGTCATGGATGCTCATCTTCGGTATTATCGACAGAGTTATCAGCTATTACATGAGCTAGAGCCTTTCATTATCGAGGTTTTGGCTTATACACAAAAAGCAAGAGAAAGTTACAATGAAGAGCAGATTAGTCTTTGTGAAAGAATGCTGGAGTACAAAAAACACATTCATCAAGAAAGTATGTTGTCCTTGAATGGCCCTTATAGTTCTCCCAGTAGAGATGGGGTTCAAGGACAGCCTTTTTCTAGGATATCAAATAAAGTGGTAGATGCTGTAACAGAATCTGCTGAAAATGGAAAGGTTCAAATCCTTCGGCAAGGATATCTCTCTAAACGATCCTCAAATTTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGCGGAATGCTTTACTACTTTCGTAAACCATTACATGTTGGCAATCAATCATCTTTACACAGAAATTGTGCCACTGATAATAGTGCTGGAATTTTGAGTCGCCTGCTTTCTTCACATAACCATGGAATTCTCCCTGATGAGAAATCTGTGGCACGTCATACAGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAACAGTCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCATCAAAGAGTTATACATTGCAGGCCAAAAAAATGCAGGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGCGTAATTGCCTCCTTATTGAGTGCACAGACACTGACAGATGACTCAGAAAGCCGTGACTGTTACTCTGCCAGCAAGATTTATTTGTTAGGTTCTCCATGTGATGATCATGCACTGAGTGGGGATCCTATATCATCTGAGGACTCGCAGAAGAATAAGCACTGTATAAAAAATGAAAAGCCACTCGATGTTCTTAGAAAGGTCAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGATCCAGACTGGGCATCGTTAAACCTTGGCATCCTTGTATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAAGTAAGATCACTGACACTTGATGTAAAAGTATGGGATTCCGCTGTCTTAACCATGTTTCAGTCACTAGGGAATCTCTTTGCAAACTCAGTTTGGGAGGAACTGTTGAATGCATGTACTTCACAAGCTGAGGACAATGCTGATGGTTCATCCAAGACACCGAAAAAGTTATTTCATGCAAGAAAGCCATCATATGATGATCCTATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTATGCTGCGAAAATCTTTGTTCGCCGGACAACAAATGACAACAGTCTCCTTTCAGTGGCACAACAGATGGCAGAAAGCATCAGTGGCAATGACAAGAAAGCAGTGTACAGGCACATTGTGAAGTCAGATGTGAATGTCAATGCTATTAGTGGGGAAGCATTACGTGGCTTTTCTTCCAACACGCCTTCTCCAATTGGTCCAAACATATCACCTGAAATTAAAACTCAAGTAATGGAGGGCATAAAAGATGGTTCTAGTGCGCTTCACCTGGCATGCCTAACTGGTGATGCTGCAATGGTGGAGCTGCTCCTACAGTATGGGGCAGATGTAAATGCTATTGATTCCAGAGGGAGGACACCACTACATTATTGCATTATGAAAGGGAAGAATGCAGCTGCAAAAGTACTTATTTCAAGGGGGGCCAATCAACATGCCTTAGACAAAGAAGGCAACACTCCTTTTAAGCTTGCACGAGAACCTGACACTGTTGGCAAAGATATTCTTGCTATTAACAAGCAAATGGCATACCCTCAAAACTTAATGGAAAAATAA 2403 0.4186 MNNFSKLNDSPMFRQQLQCMEESSESLRARCCKFYKGCRKYTEGLGEAYDGDIAFATALESFGGGHSDPLFVTLGGPVITKFAIATREIGTYKELLRSQVEHMLNDRVLNMLNVDILDVKEARRRFDKASLVHDQAREKFMSLRKSTRVDIAAVVEEELHNSRNSFEEARFNLVSALHSVEAKKRFEFLEAVTGVMDAHLRYYRQSYQLLHELEPFIIEVLAYTQKARESYNEEQISLCERMLEYKKHIHQESMLSLNGPYSSPSRDGVQGQPFSRISNKVVDAVTESAENGKVQILRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYFRKPLHVGNQSSLHRNCATDNSAGILSRLLSSHNHGILPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKSYTLQAKKMQAENALDQMDWMEKITGVIASLLSAQTLTDDSESRDCYSASKIYLLGSPCDDHALSGDPISSEDSQKNKHCIKNEKPLDVLRKVSGNDKCADCGKPDPDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWDSAVLTMFQSLGNLFANSVWEELLNACTSQAEDNADGSSKTPKKLFHARKPSYDDPISLKERFIHAKYAAKIFVRRTTNDNSLLSVAQQMAESISGNDKKAVYRHIVKSDVNVNAISGEALRGFSSNTPSPIGPNISPEIKTQVMEGIKDGSSALHLACLTGDAAMVELLLQYGADVNAIDSRGRTPLHYCIMKGKNAAAKVLISRGANQHALDKEGNTPFKLAREPDTVGKDILAINKQMAYPQNLMEK 800
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mupr9378g00002 800 SMART arf_gap_3 488 631 IPR001164 GO:0005096
Mupr9378g00002 800 Pfam PH domain 297 432 IPR001849 -
Mupr9378g00002 800 Gene3D Arf GTPase activating protein 471 632 IPR038508 -
Mupr9378g00002 800 Gene3D Arfaptin homology (AH) domain/BAR domain 5 251 IPR027267 -
Mupr9378g00002 800 ProSiteProfiles Ankyrin repeat profile. 700 732 IPR002110 GO:0005515
Mupr9378g00002 800 Pfam BAR domain of APPL family 7 234 IPR004148 GO:0005515|GO:0005737
Mupr9378g00002 800 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 472 632 - -
Mupr9378g00002 800 ProSiteProfiles ARF GTPase-activating proteins domain profile. 488 631 IPR001164 GO:0005096
Mupr9378g00002 800 Coils Coil 119 139 - -
Mupr9378g00002 800 SUPERFAMILY BAR/IMD domain-like 7 318 IPR027267 -
Mupr9378g00002 800 SMART ANK_2a 733 762 IPR002110 GO:0005515
Mupr9378g00002 800 SMART ANK_2a 700 729 IPR002110 GO:0005515
Mupr9378g00002 800 Pfam Putative GTPase activating protein for Arf 491 625 IPR001164 GO:0005096
Mupr9378g00002 800 CDD BAR_SFC_plant 16 216 IPR035670 -
Mupr9378g00002 800 Gene3D - 689 792 IPR036770 -
Mupr9378g00002 800 SUPERFAMILY ArfGap/RecO-like zinc finger 487 626 IPR037278 -
Mupr9378g00002 800 CDD PH_ACAP 298 437 - -
Mupr9378g00002 800 PANTHER CENTAURIN/ARF 4 791 IPR045258 GO:0005096
Mupr9378g00002 800 Pfam Ankyrin repeats (3 copies) 700 761 IPR002110 GO:0005515
Mupr9378g00002 800 ProSiteProfiles Ankyrin repeat region circular profile. 733 765 - -
Mupr9378g00002 800 SMART 5bar 3 219 IPR004148 GO:0005515|GO:0005737
Mupr9378g00002 800 ProSiteProfiles Ankyrin repeat profile. 733 765 IPR002110 GO:0005515
Mupr9378g00002 800 CDD ArfGap 491 618 - -
Mupr9378g00002 800 PRINTS HIV Rev interacting protein signature 542 563 IPR001164 GO:0005096
Mupr9378g00002 800 PRINTS HIV Rev interacting protein signature 500 519 IPR001164 GO:0005096
Mupr9378g00002 800 PRINTS HIV Rev interacting protein signature 519 536 IPR001164 GO:0005096
Mupr9378g00002 800 SUPERFAMILY PH domain-like 296 446 - -
Mupr9378g00002 800 Gene3D - 287 449 IPR011993 -
Mupr9378g00002 800 ProSiteProfiles Ankyrin repeat region circular profile. 700 731 - -
Mupr9378g00002 800 SUPERFAMILY Ankyrin repeat 701 776 IPR036770 -
Mupr9378g00002 800 SMART PH_update 296 435 IPR001849 -
Mupr9378g00002 800 ProSiteProfiles PH domain profile. 295 433 IPR001849 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mupr9378g00002 Mupr-Chr9378 3854 12073 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr9378g00002 498 625 C2H2 Transcription Factor Family AT4G21160 41.860 2.22e-21 94.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr9378g00002 K12489 - gmx:100797073 1296.95